Gene detail

Detailed information of PcrG013648.mRNA1 in Podabacia crustacea

Genomic Location: ptg000517l:503921...549053
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG013648.mRNA1

ATGAAAAATTCCAAACAAATTCTTTCAATAACAAGTGCTGCTGTGGACGCACTATCAAGTGCAAGAGACGTTCATAAGGGAAAGATTGCTAAATCACAAAGGGCAACATCCTCAATTCCACGAGGGCAAGATGTCACGGAGCAAGTTTCATCACACAATCAAAACCCATCTTCAATGTCTTCTTCCACTGCAGCTGACCGTGTAAATGAAGAAATCAAAGACCAGTCATCTTCGTCACTTTTTGAGCCGTCTTTTAATGGCACCCAGAGAGTTAGAGTACCTTCAAGACTGCTCCGTGAAATCAGATCTCCACTGGAAAGAAGTTCTTCATCAAGTGATTCTAAAGAAACTACTGAGAGCATAGTGAAAGACCAAATAAAACCCACCCCAGTTAAAGTTGTCAGACATATAGATGGCCCATCAGCTTGGATTTCATCCAAAGAAGATGATGCAGGCCATGATGTTAAGTGTCCAAATCCTGTGAAGACTATTGGAGAACCTTCCAGAGATGATGCAGTAAATGAAATGACTGTGTATGGAACTAAAGAAAATTTGGCAGGACAAGTAAAAGAAGTCACAGTGCAGCATGTTGAAGATGTAACTGATGGACAAGAGACAGATGACAGAAGGAAGAATGTGCCTGCAGTCAAAGGCTTGTACCAGGGACAACCAAAGTATGGCACCCCAGTTTTCAATCCAAATGAAGAAAATGCTGGTGATGTTAAAGTAAAGCGATTTGTTTTGAATGATAAAGAAAAGGCTTTAAAAGAACAGTTCTTGAAAAGACAAGACCAGAAAAGGCCAGTAAAAAAACTGGTTCAGCCAACAGTGGTGTCACCTTTGACTGAGGAGGAGGAGAGAAGTAAGACGCAGGGTGGAATGGATAGTGAGAATTCTGTAGCCACTGCAGCAGCCATTGCTGCCGCAGCTGCATCAGCAGCAACTGGGCCCTTCCTACAGCTGCAACATTCCTTGGAGGCTCAGATTGCTGCCCTTGTTAGCAATTTACAAGTTCTTCAACAGAATCATAACAGACAACAAGAGCTACAGGACAAGGAGAAAGAGAGTAAACTGCAACAGCAGATTGAAGAAAGGTTAAAGAGGTTGGAAGATCTGCAGGCAAACATGCTGAGAACACAATCTATTCAGTCAGCACAAGTTTCATTCCCTGCTGCTTCCCAGCAACCTCTGGCAGCTTCACAACCATCCAACACAATGGAGCCTGCTGGGATGGTACCGCCTACCAGTCACCAGTCTGTGCCTCAAGTGTCTTCTTATCAAAATGCACCAGTATGGCAGAATGATAGAACTCAACCACAGTATGCTGTGGCTGGACACTACACCAGACATGAAAGTCCACATCCTGATGACCTGCTATCTTATCCAGGAAGAATACCAGCCTTTGAAAAACACAAAGTGGTGAAAAACACTAGGACCCAGACATCTCCCCAGGAATCTGTTTCTTCAGAAGAGTCCCCGCTCCAGACTCCACTCCCTCGTAAACGACCACCTATTCCAATCTCCCGTTATGACTTGCCAAGAACACGCGCTAAGAGATCTGATGCTAACAGCAGGAGAGCAGAGAAGAAAGCTCGTGTGCGTTTTGAATCAGATGTCACTCCAAGATTACCGTCTTACATGAAGGAAATGACGCACAAAGGGCGAGGACTTGTTAAAGAGCTTGTGTCTCAAGACCTAGCCAACAGAGAGGATGAGACGGGGATGGAAAGTCGTATACCGCCTGACAGCATTCCTGTACTTCCATCAAGATCAGAAACTGTAGCACTATCAAATGATGTTGGAAAAATCAAGACTGAGTTAAGAGATATTCTTACTGAGACAGAGAGACTTAAACGAGAATTGGTTCAACATCAGCTGGCAAAGGACGACATTCATTCTCACACATTACCAATTAGACCAACCGGCCCATCACCTCTGGATGAATACTTGGAAACTACACATGTGTCACATTCATTAAGGAATCCAACAGTGTCAAGGCCATCAGGTTTTTTGTCAACAAGTTCAACACATCACCATGTGGATGCAGAACGCATCCTCCAAGATGTTCAGCGTCGACGGCAAAATCTGGATAGCAACTTGGAGGCTGTGATTAGGCAAAGAGAAGAACAAGATCTGTATAACCTGGTGGATAATGTTACAACAACTAACAGTGAGTTTGATGATCTATTGAGAATAAGGAGAGAAGTGGACAAAAAGATAGGAGAGATCACTTGTGCAGTGCAGAGAGAAATTAATCAGGAAAATCAAGATACTTCTAAACAAAAGGAAGATCTGAATCCTTTAAAGAAGTCTCAACCAGTCAAAGCTCCACCATATGGAGCCAGAAGAGTTGAAGCAAGAACAGCAACAAGACCAGGCACTATAATAGGAAAGAAAGTAGTGAACAAAATCACGGGCAAGGAAAATCTGCCAGAGAAATTGGCTGCTAAGAAAGGCAAGTCTACAAGGAGCCAAGCCCCTGCAAAGCGTCCCCCTGCAGTGACCCCTGCACAGAAACAAGTGTACATGTCAAGCGTGTACGGCCGGCAACCTTATCACCCACAGAGAACTACCTCCAAGCCACCATACCTGCACTACCAGTCTCCTGTTAACCCTAAAACAGCTGCTATCATGGCTGGAATAATGGCTGGCGAGAGCAGGGTCACTGCAAAACCAGTTCTACAAAATCAGACAAGTGTTTCAGAGAAAGAAGTTACACAACCAAGAAAGAAAAAAGCCGATGCCCTCAAACCAGAAGTCAGTGCTCACAGACAACCAACCATTGAACAGAAAGATGAGGCACAGTATTATTTTCACCCCAAAGTGGATTTGTCACAAGTTGCCCCTGGGGAGGGAATGTCTAGGGTTTTTGTACCATTGGAAGGACAACTGGTACCTATGGCTATCCCCCTGGGGAAGCCCAAGACTAACCCTGCCTTACGACCTCCCATTGCTACTCAAGATGAAAGACATCCAAGTCAAGTGGAAGCGAAGGCAGAAAGCCCCTCACCAGGCAGCTCCATAGACACAGATGCTTCTGGTGCCCAATCACCAGACCCCACTCCTGTGAGGCCCACTAGGCCTCCTCAGCCAAATGTGGCTGTGATCACTATGTATGACAAGGAACTTGGTGAGAACGCAATCCATCAGCACAAACGACAAAAGAAGTCTCCCACGAAGAAGAAGCAAAAATCTCTGTCTGTTCAGGTGTTACCAAAAGTGGATATTGACAGCTTTTCAGAATCTGCATCGTCCACACCTAGTTTGCCTCATGTTTCTGATATTCCAGAGCCTCTTTCCCGTCCTGATGATTCTGAGTACCAGGAATTTAGAAATTTTTTGGCAGTGACAGAGACTGGGACCCAAGAAAGGGATCAAGAACAGGCTTCGGATGATGCAGATGATGACTTCCACCGAATCCCTACCCCTCAGTACCCACTAACACTAGAGGGGTTCACAGAGGTACCAGATCGACCGTATAATGGCCCCCCGTTTCCACCTGTGCATCCTCCAGTTTCGGCACACCACACAGGAGGGGTCCTTGAAGCTGATACCCGGCGAGAGGAAGCTCTGCAAGACAGAGCTATGGAGTGGATTGAACAAGAATTGTTGGCACGTATTGTTAGTGAAATGAACCAACCCGTGCCTGACCCTACCACCCTGGTCAGACCTCAGATCACCCCTGAAAGTAGCACTGTATCTGAGCCTGAAGACGAGGATGCTGATATGCTTGCTGCCACACTTGGTCAGGGTGGACTTCAGCTCTTTATTGACGCGGGCTTACCAGTGGACCGACATCTTGTTACCAACTTGATTCGGGAAGTGATAGCAGAGAATGTTTCCACAGTTCTTGGTCATCCAAAACCAAGAGCCAGTTCTCTTTCTTCAAGACAGCCGGTCGTGGAAGAACACCGTTCACCTACTCCCTCTCCTAGGGGAACGCCATTACCGACCCCCACCCCCACCCCCGAGTACACACCGCCAGAGTCAGAGGAGAGCGCTCACGAATCAGCAATATTAGCAACTCCTGATCGGACCCCCACCCCATCAGTAACAAGTGAAGAGCTGACTGCATCTGACACAAGAGAGGAAGAAAAAGCTTTTGAGCCAATTAGTGAAGGACTGGATAAGGAAGAACACACAAATGAACAGATATCTGAAGTAAGAACACCTGTGGCCACCCCAGTACCAACGCCACCTGGTGCCCAATCCTCTCCGGCAGCCAGTGTATCTACACCTGAGCCCTCAGTCCGAGAGCCAGAGTTATCTCAAGATACAGTAGTCCCCACGCCTACTCCGTCTGTTGTTGTAAAAACACCAACTCCGGAGCCTGAAACCGAGCCAGAGCTGAGAATAGCTGAAGAACCCAGGCAACCCACAGAACCATCTGTCAGTCAAAAGGAACTGACACCACCTGAGCCCGCCAAACCTTCTATCAGCAGTCCATCGAGCATGTCATCTACCACCTTAGGTACAACAACAATAACTACCGAGGAGGAGATGTCTGAGGGAGAAATGATACAGCCTTATGTTCATGCTGGTATGTACAGTGAAGGAGAGTTTGCTGTATCACCGACCATTGTTCAACTGGCTGCGCAAAGAAAATTACCTGTGGGTGTAGACTGGGACATAAGCATGTTAGGACATGATGAAGACAGTCGTAATGAGCTGGTGAGAGTTGCTCTTAATGGACTTCTACAACGCGATGAAGGAGGAAAACGACATCAGCAAGGCTACCGGGACAACAGTTCTAGCATAAGTGATTCTATGTATCAAGTTAGCAGTGCCAGTACTCTGAGAGATACAGAGGAAATCAGACAGGATTCTATTACGGACGTTACGCAAAGTGAAGGAGAAGTTCTTGTTCAAGATCCAATGGCGGTTCTGTTGAGCCGCATTCAAAGCCACATGAGGTCAGCGGACAACAGTATGGCCAGTGAAGGAGAGCTGTTAACAGAGCATCTGCGCATGCCTGAACTAAGCCAAGAAAAAGGTGAAAAAAGAGACGGTGGTGAAATAGCCCCTGGGAACATCTCTCCCGGTGAAGTAGTGTGGGAACCAACCGGTATAAGGAAAGAACCTAACCCGGTGCCTGCTGATTTCATTCTTGATGATGTGGATGTGGACGAAGAGAAAATTCCCGCAACAGTCGTACATAAAGTTGCACCGACGACTGTCGACGGTGAGCCGAGTCACGACGATCGTTCTCTCCATGCGTCGGACTTGCTACCGGGAACACTCGGAACAGACATTGCTTCTCCGGCGTTTGCACGACAACAACGCTCAAAGCAGCCGAGGATCATTCACGTTGAAGAGCAGGAGAGTGAACCATCTGTGTCACAAAAGACTTATTCACTTGATGAGGACCGGAGAAAGAAATCCAGTCCTCCTGAACATAAACAGGTTGCTGTGGCTTTTAGTGGCGCCACTGAACCAGAAGGCGAAGAAATAGAACCACAACAACCAACTAAAATACAAGTCACATTACCTTCAATTGATGACGCTCGTGAAGAAAGCTCTGTAGCAAGCGAACATCCTGTTTCTATTGAACAAGATACTTTTGGTGACGTGTCATCCATTTCAGGGGGGGATTTTTGA

Transcript

PcrG013648.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15324 all species →	TALPID3	Hedgehog signalling target	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029246 all species →	Family	Protein TALPID3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15721 all species →	KIAA0586 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007224 all species →	Biological Process	smoothened signaling pathway	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22865	TALPID3, JBTS23; protein TALPID3	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.