Gene detail

Detailed information of PcrG013935.mRNA1 in Podabacia crustacea

Genomic Location: ptg000538l:194968...247517
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG013935.mRNA1

atgacattccactcagaccaaagttatcaaaggaaaggattccttttatctttcactgctgttgttatcaTTGCTCCCAGGTTGGCGTTGCGGGATCCTATTGTGTCAGCAATACCAGGCAACATACTCTTGTGCCTAGCGACTGGAACTCCTCCTATATACACGGCACTGATAAGGAACAATATATTACTGGTAAACAAAACAGGCCAGCGGGTAGGCATCAGATTGTACGTGGAAAACAACTACACTTGTGTGGCCACAAACAAGTACGGGACTGACGCGACAAAACATTCCATCGTTTTCGTCGaatgcggctcagtggtgaacaacactctacaaagtccaggatatccacacaactacgcggccaatatggactgtagttacacggttcctattccacacggcatggcaatgaaaattgtcttccacgactttttcttggaataTCATTTATCATGCATCAAtaatgactatttgaagattattaatgagaacaacgaggcatttggtgtatactgtggaaagaagactgggaagatggtggttgtaactggaaagtccgtggtgatgacatttcactcagacagcgttgttcaaaaacgaggatttgttttattgtttactgcGTTATATCCTACGCCACCCAAGATTGTGTTACCATCTTCTGTCGTGAGAGCATTACCAGGCTACAAGCTTTCATGTCCAGTCACCGGTACTCCTCCCATGTACACCGCGCTGATAAGGAACTCTAGTGTACTTGTAAATACAACAAACATTGCTGCAACTCTCATTGAGGAGGGAAACTACACATGTGTGGCTACTAACAAGTTTGGAAGTGATATAAGGGAGTTCTCTGTCATTCTTGACGATTGTGGAGAGCGGTGTTTCTCTAAATGGGACGAAATTAATGGAAATACTCTTACGTGTACGGATGTAGTGTTGCTAATGGACACTATTAGTTGTGCTCCAACGATTACTACATACATAGAGTTATGTTGTAACAATATTCAAAGCGTCAGCGCAGAAGTATTTTCCCTGCCAAGCATAAAAATTCTTTCTCTGATAGCAAACAATATCAAGCACCTTAACGCCGATGCATTTTCCACTCTTAAAAATCTAAAGTTTCTGTATCTTGATTCAAATGGTATTCGGAACCTTCCCGCCGGTGTATTTTCCACTTTAAAAGATTTATACCTTCTGTGCGTGTGGACATTGTCTTTGCGAGCAAACAATATCAAACACCTTAACGCCGATGTATTTTCTACTCTAAAGAATCTCAATGTTCTGTATCTTGATTCAAACGGTATTCAGAACCTTACCGCCGATCTATTTTCTACTCTAAAAGATTTACATACTCTGTGCGTGTCGACATTGTCtggtgtttgGTATTTGCAGAACAACACGATTTCATCTATATCAAATGAGACTTTCTCCAAGAGTACTAGCCTTGTCTATATATTCTTAAGTTTCAACCGATTACATAATATTCCAAGCCGAGCTTTCTTTAATCTGCAGCAAGTGGGACTTAACAATGAGATGATAATGTTGACGGATAATCCAATCAAGTCAATTGAGCCGGGAGCATTTAGAATTGGCGGTCCAAGATTAGAAATAAATCCTGTGGATACCAGCACTGCAGCTGTCAAAGTTGATCGTGATTCCTCTATCGAACAAAACGGAGTGCCCATAAGACTGGCAATTTTGCACGCTTTGATGGCTTCGGGATTTGGAATGACAGATAATAAAACCACTGAAATGGTTTTGTACGTTCTTCCTTGTCCATTGGGAACTTTTTCCAACTCTTCTTCTGGAGGATTAGACGGATGTACACCATGCCCGCCAGGTGGATTCTACTCAGACGATGTAGGCCATGTTTCCACAAGCTGTAAGAGATGTCCAAATGGCTCGTTTGTTGCATTCGACAAAGCACCGGGAACTCGAGCTCAAGATTGCAAGTCTTGCCCTCGAGGTACAGAGACCGATTTCTTTGCTGGATACCGTGCATGCAGATGCCTGGAAGGATATTACCGAACTGATATGTTCGACAAGTGTAACAAATGTGGACAAGGTGGACTAGAGTGTAAAGATGACTACGCTACTCTTAAACCTGGTTATTGGTGGAAATGGAGGAATGAGACGTCCAAACGTCAGTACAGGATTTTTATTAAAAATGTCATGTCATCTTTACCAAAATTAGGTCCTAATGATGTCCGATATCCATATGCGATACCAACTCCTTATATGTGCCCAACAGAAAGGTCTTGCAAAGGTGGTTTGAATTCCGAGTGTGATAGTCGGTACGAAGGTCCACTCTGTTCAGTTTGCAGTTCAGGATACTACAAGCAATTGCAAACTTGCACGCGATGTCCGTCAAAGAGATGGATAGTGGGACAGTTGTTGATCATTGCGGCCGTCTTTCTGATAATTACGGTCGCCTTTTTGGGGAGAAGGAAAAGAAAAATCCAGAAGGACAGAACACGTCCTCTAACAGACGTGTTTTTCTCTAAACTTAAGATCGTGATTGGCTTTTATCAAGTCACTAATAGTTTGCTGGATGCGTTCTCTTATATACAATGGCCAGATTCGCTGCAAGTCATTGGCAAATATTCAGGCGTACTCCAGATGGACATACTTCAGATAGCACCTGTTCATTGTCTTTTCCAAGAATTACATGTCGATGCCTTTACAAACCTGTTTGTGATTATGGCAATAAATGCTGCTCTTATTGGCTTTTCCGGTGCCTTATACGGAGTACTCATTTTACGAAATCGAAGCCTGGAGGAGGAAGAAAAGTCCAGGAAAGTTTCCGAGGTCAAAGAGTTGGTCAACAGAAATTTGTTCTTCTTCCTTTACGTGACGTACCTAAGCACATGTTTTAAGACAATGAACGTGCTACCACTTGCTTGCCGGGAGCTATGCCGAGATGAACGGGAAGAAATATGCAACAAGTACATGAAAGCGGATTACAGTATACGATGCCAAGGACCAAAGTACAACAGCTTGCTTATCGTGGCATATTTTTCGGTTGCCTATATCATTGCCCTCCCTGCCGCAGCATTCATTACTACTTGGAGGCAACGAAGAGCAATGTTTGTTAAACAAGGCTCTGGCACCTCTCAGGATCCAGGGTCTGGCATCGGATTTACCACAGGACTAGGTTTCCTATTTGAAAACTACAAAACCCGTTCTTGGTACTGGGAATTGGTTGAGATGTCTCGCAAAGTGATCCTTACATCTGGGCTGATCCTTGTAGGAAAAGAGAGTAGGTCTTACATTGGTTTAGCGTTGGTCGTTGCTGGGATGTATGGAATGCTTTTCTCCTGGATCAAGCCGATAAAAGACGGGTTCGAGAATATGCTTATGTCCACCTCTCTGGCTGTTACAGTTGTTAACTTGGCGGTTGGCGCTGCAAGTAGAATCCCTGCGGAGAACATACAATACTCAAGCGATCCGTACATGGATAAAGTCTTGTGGGACGTATTGGTTATTGGAGCAAATGCTTTAGTCTTCAGCATTATTGCTGTTCAGTACGCAGTGTCCCAATATCGATACCTAAAACAATGGCGCAAAAATCCAAAGTGGTCCCTATCTTGCTTTCTGGCTTTACTTCTCTCCTTCATCGACGTGCAAGGCGAAGTTGGTGGTTTGGTTGAGATGAACCCTACTAACCACGTGCTTGATGCCGGAGATGTGGAAATGCCCACCATTCTTGATGCGGTGGAGGAGAGTGCGGTAGTAGATTTCAATCCAGGTGGAGACGATCGTAAAAGCAAGAAATACAGCAAGAAAAAATGTCATCAAGGAACACAAACAGAAGTTATGCTTCCCGTCAGGGTTGCTCAGGAGCCAGTGAACGAAACACGGTTATGA

Transcript

PcrG013935.mRNA1

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000105 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050333 all species →	Family	Small Leucine-Rich Proteoglycans	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45712 all species →	AGAP008170-PA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04625	TAS1R2; taste receptor type 1 member 2	-	G protein-coupled receptors	ko04030	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.