Gene detail

Detailed information of PcrG014127.mRNA1 in Podabacia crustacea

Genomic Location: ptg000566l:402223...408015
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG014127.mRNA1

GGCAGTGTGTGTTTCTGTTTCATTCGGCACGGAAGTGCAAAAATTTGCCGAAAGTTTCAATCATTTCCTTTAATTTTTTTGTCTGATAAAGTCCAAAATAGGATATGCAGATTACCGTAAAAATATTGAACGGCCAAGAAGTACGTCTAGAGGTTTCTGAAAATGATCAGATCTCACTATTGAAAAGACTTGTGTCTGAAAAACTTGATGTGCCTATTGATCAGCAAAGATTAGTTTTCAAAGGGAAAACTTTAGCAGATTCTTCCACATTACAAGAGCATAAGATTGTCGAAGGAAGCAAGATTCACTTATCCGTAAGAAAACAAGGCAATGGAACTAGTGGTGGGAATCCTGATAACTTCTTTAAACTACTGCGTGAATTCCTTAGAGAACATTTCACTGAACAAGATACTGAACAAGTGATACAGAAATTCAGGGAGGACTTCAAGACATGGGTGTGGTCTCTTAGTCTTGATGACATCGAACGAATGGCAGCCCTTCACATGAATGAGTCAACAGATTCTGCTCCTTTATAACAAACCCAAGATCCCCAACCTTCCAAAGAAATAAAATAATATTCGGTTGTCCATCTGGAATGAGGATTGCAAAGCAAAAGGAGCAGTCATCTTGGCATGATATGGTACTGTCAGCCTGTACATGTCACACCACGTCACTAGTAACAAATATGTAGAAATATCCAAGTCTTGAAATGGACCATATAAAAGACCCTGGAATTAGTATTTATCAATGGAAGCAGGATTTTTATTTTTTTCCAGTTTTAGAGAAAGTATAACCTTTCCAGTAGAGATGCTGGTAACAAGATTTGACATTTGTGTTTTCTGAAAGTTAAATGTACTTGTGTATGGTTTAGATGAGTTCTGTTGTGGATGGCGTATCTTGAGAAATTTAACCTATTTTTTCAAGTTTGTCGTTTGTAATCTATTTCAATCCTAATAACCCTTGTTTCTGTTATTTTGTTTTATTATTTGCCTCTTAAGTTTATTTTTCCCTTAATTTGGAGATAATTTTTAATATGCTATAATTACATATAATAATTAAcaattagactacaaacccgagttttttatgagtgactagtcaacaaggcgcagccgagttgactatcgctcatagaaaatgagggcgagtagtctaattgctttacaatccttaaggattgcaatacaaagcctacaatattatgcactttgaagacaaaaatgaagaaaatttactgcttaaaggactaggcacgcacaactgttttctattggcgaatagaaaacgatgtaaccaatcagattcgtggatttccaatagaacacagctgagtttctactaaTGGCTGTTATGCTATAAATACCCTGGAATGCTGCCTTGCAGTTGTGCTATGTCAAGAATTACCACAATCTGCAAATTTGAAATTACATGTATAAACATTCAAATCCCTCTTTGTTACTCTCGACATTATTTGACAGGATTGTTAGAGTTAAGGTTTTGTGGAAAATCCTTCCTAAAGTTGCGAATTAAGTGCAAACAAGATTAAAATATTGCCAAAGAGGATAAAAACTTCAATATTTAATAAATTTATTTGAACCATAAAAATGACGTTTTAGGAGCTATTTATGTTTGTTCAGCCGATGAAATTTGCCAGGAAAAATTATTCAAATCTGGCAACACGTTCAAAATTGACACGTACATTTGAACGTTCAATTCAAATTTCAAAATATTCTGGTCATGCTAACGTAGCACAACTGCATAACAACTTTCATTGTCTTTTTAGCTACCTTTTACCAAGCCATTGATTATTATGAGCACTGGCCTATTACTTTTTTTTACAAATAAATAGACAAACATAAATTGTACTTTGGTTAGAATTTATTTTATTACAAATGTCTGTAGTGCAGACACTTTTGGTGTACTTGCATTAACAACCTGTTCACTCCCTCTGTTTTTGTTTCTTTTACTTGCCCCACCCCTCCCACTCATGGGTAGAAACTTGTAACTTAGAACGCCTGCATAGTGGGCTAACAATTAAAGAGTAAACAGCCTTTCTCCTTTAACTTGTAAACAGAATTTCAGGTCACCAGAACTCCATTTTTAACCCACCCCACATCCTTTAGTTTTCCTCACCTGACTCACAATGGAGCCCAGACTCCAATGAGCAGAGAAGGCTTAGCACCTTGGAGCTCCTAGGGACAACTCACCCTCCCACACCCCTTTTACTTTTTAAATCCCTTTACATTTCTAAATGGAAACTTCGACTTGATCCACTTCACAAGTGAAGCCATTAAAAATGCTCATAATATCAAGCAACATCTCCTAGAATGATTGGCTTGTTC

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000491 (this species only) · gene tree & orthology
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF17840 all species →	Tugs	Tethering Ubl4a to BAGS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019956 all species →	Domain	Ubiquitin domain	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR019954 all species →	Conserved_site	Ubiquitin conserved site	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR041421 all species →	Domain	Ubl4, C-terminal TUGS domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46555 all species →	UBIQUITIN-LIKE PROTEIN 4A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006620 all species →	Biological Process	post-translational protein targeting to endoplasmic reticulum membrane	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0071816 all species →	Biological Process	tail-anchored membrane protein insertion into ER membrane	Interproscan
GO:0071818 all species →	Cellular Component	BAT3 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23388	UBL4; ubiquitin-like protein 4	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.