Gene detail

Detailed information of PcrG014331.mRNA1 in Podabacia crustacea

Genomic Location: ptg000593l:277363...299140
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG014331.mRNA1

ATGTTGATCAAGGAGTACAGAATTCCTCTGCCGATGAGCGTTGAGGAGTATAGGATAGCTCAGTTGTACATGATTCAGAAAAAGAGTCGACTGGATAGTGTTGGAGAAGGAAGCGGGGTTGAGATCCTTGAAAATACTCCTTACACCAATGGACCCGGAGGTAATGGACAATATACAAAGAAAATTTATCACATTGGAAGTCATTTACCAAGCTGGCTGAAAGCAATCCTTCCCAAGGCAGCACTGAGGGTAGAAGAAGAAGCCTGGAACGCCTATCCATATACAAAGATGAGGACAACATGTCCTTTTGTAGAGAAATTTTTTGTTGACGTAGAAACATACTATTATCCTGATGCTGGACAGCAGGAAAATGTATTTAAGTTATCGCCAGCCGATCTTCAAGGAAGGGAAGTTGATGTAATTGATCCAATTAAGGACCCAGTCTCCTACTCGGACTATATGGAAGAGGAGGATCCATTGTTGTACAAATCGACAAAAACAGGGCGGGGCCCCATGAAAGAGAGCTGGCTTGAGCACTACAGAGTAGACAATCCACCCTCTGATGTCATGTGTGCCTACAAGCTTATAAAGGTCGAGTTTAGATATTGGGGGATGCAGAATAAAATTGAACATTTTATTCACTCGGGTCTGCGTCGCCCTATGTTAATGGGTCACAGACAAGCGTGGGTATGGCAGGACGAGTGGTACGGACTCACAATTGAAGACATCAGACAATTAGAAGAAGAAACACAAAGAGTACTGGCCAAAAAAATGGGCAAGCTATCTGATCATATTATCAGCACTCCTTCGGATAGAGAAAGTGACCAAGAGGTGGGCTTCGCGAGCGAAAAGGGTCGAGGAAGCGTAGTTTACGTTCAAGAAAACAATAACAGCTCTAAATTAGAACTGATTTCCAAAGTTTCGCTTGACGAAAACGAGGGAGTTTTATCTCCTTCGCCCGTCGCTATAACTGTGGAAAACTTCGGGTTTGAAAACAAAGAATCCAGAAGAAACTCGTACGGTTTTGAGTGTAATGGTGTAAGCCAGAGAGACTTGAGTTCTACGGCTGATAATTCAACTGGAAGAGGACTATCGTGTTCGGATGTACTAAAAGGTTGGCATATAAGCACGATACAAGCCAGTGATTCTGAGGATGACGAGTTCTTCGACGCACAAGAGGAACTTGAAGAGCAGCCTTTCAGTTCGAATCTGCTGTCCATACATAATGTGGAACTCAGTAACAGTTTCAAGAGTTTAGAGTTGGACACAGATTCCTCTCGGGGTAGTAGAGAGTCATTGGATTCACAGGCATCATCCATCCTTGATGACAGTTCAGATAGGTCACCTCGCCTGATGCGGAAGGAAAAGCTGAGTAAGAAAGTCAGCGACACTTCGACTTGCTCGTTACCAACCTCCTGCATCAAAACTCTCATTATTGTCATCCATGGCGGTACGCAAATAGACACGGGATTGGACCCCACGTCACGTGACATGGACTTCAAACTGCTCCAGGATGCGTTCGAGGCTGTGATTAATTCGCACTACAGAGGGGCCGTGGGAAAGATCGCCTTGAGACTTGTGGAGTGCCCTGCTATCTGCTCTAAGGCGCTTAATTTGTTGTCGCAACTGTGCACCTATTCAGAGAGCGACTCGGACGTGGCTAGTGTCAACAGCGGTTTCACACCAGTCTCCAGTAGTTTTCCACTAAGCGCCATCTCTCTCATGGTTTCGTCGTCGCCATTTTATGACGACGCAGTCAATTCCATGATAGTTTCCATTAACATGGTGTATCGAGAGTTCCTCAGATCTGATGAAGGCCAAGGATTTCGGGGAGAGGTCTGTCTCCTTGGTGACTGCATGGGTGCCCTGCTCGCTTACGATGCCCTTACCTCGAATGTGAACACCTTACGTAGCCGCACACAGAGCTGCATCTCGAACACAGCGATGCTTTCCCCAAACGCCGCCTCAACCACGCCTCAGCAGAATGCAGAGACTAACGGCGGCCTGCCAAGAAAACCTCGGCGCATAAGCAGTCACACACCACCAAGTAAAAGCAGCCTGGAGAACTCGCACAATCTTCGGCTTAGTCTGAGCAGCGGGAATATCCGAGAAAATATCGATCCAGAGAGAGACGAGATGATAACTTCCCCGCCGGTCGAAGAGACGGACGATAACGTAATGATTTCACCGCGTCCTCTAAGCAAGGCGGCGAAGCTCCACACGTTTAGTTTTGACACCATGTCGCTGTCCGTGGAATCTGTAGATCACGTGTTGTTTGATTTTGAAGTCAGCAAGTTTTTTGCGTTTGGTTCACCTATTGGACTCGTGTTAGCTTATCGTAGGTTCCTGAACGGGGAGGACAGGGGAACGCTAGCTGTGCCGCCAAAACCTGCTTGTAACCAGTTCTACAACCTGTTTCACCCGTTTGACCCGTCAGCGTCCCGAATCGAACCTCTGATCATGAGCCAGTTTTCCCAAATCCCTGCTGTAAGCGTGCCTCGCTATCACCGGTTTCCACTGGGTGACGGCCAATCACATTTCCTTAACAACGTCATCGGTGCGTATCCAGAATTGTTTGTGAACCAGCCGCCCTTGGCTCCTGGTGTCCTGCAGCTGTCCCGCCCGGGATTGGTTAAAAGAGGGGACAGTAATCTGAGCACAGCAAGCCTGGTGTCTAGTGACAGTTCTGGAGGGACGGACTTGGATATAGCAACCCAGAACTGGTGGGGCACAAAGCGTGTGGACTATGCTCTGTATTGTCCCGAGGGACTTCAGCAGTTCCCCACAGCCGTGCTTTCGCCTCTCTTCCATGTCAGCTACTGGGAGTCCAGTGACGTGGCTGCGTTTGTCGTCAGGCAGATTCTTCATGGCGAGTGGGACATCTCAAGTGCTTCGTCTCCCAATAAAAGATGCCAAACATTTAGTCCTTCTGAACCCAGAGAGAAGTGGTTAAAACGAAGAACTGCTATCAAAATCAAGAACCTGAACGCTAACCACAGAGCTAATGACTGCATTTTACTTGAAGGTCTTGATCAATCTATCTCGGCCAGGTTCATGTATGGACCTCTTGACATGGTGTCTTTAAGTCACGAGAAGGTGGATATTTACGTCATGACCCAACCCCCCTCGGGTGAGTACGTTTTATTTGACACGGCGGTGACCGGAAGTGGAGGAAGATTATCGTGTACCATTCCTGAAGAAAAGAAACTTCCGGTCGGAATTTACCCGGTCAAGTTGGTCGTTAGAGGTGACCATACATGGGTAGACAGTAATCTTGCCGTTTTACCGCCCAAGACGGAAGCTGTTGTATTCAGTATCGACGGCTCATTTGCGGCCAGTGTCTCCATTCGTGGTAAGGACCCGAAAGTCCGCGCAGGCGCCGTGGATGTCGTAAGGCATTGGCAAGAGTTAGGATTCCTGATCGTTTACGTCACAAGCCGGCCTGACTTTCAAAAGATGAAAGTGATGGCTTGGTTGGCAGAGCATAACTTCCCTTATGGGCTTGTCACGTTTGGTAGCGGCATCTCAAAAGATCTTCAGAGACATAAAACCGAGTTTCTTAAATACCTCGTCAATGATTGCCAAGTGCTGATTCACGCAGCATACGGATCAGTGAAGGACATATCAGTTTATGCGTCTGTTGGTGTTCAACCTCATCAGATATACACTGTGGGAAAACATCATCCAAGGAAATACACAAAACAAGCTCAGTTCCTAAAGGATGGCTATGCAGCTCATCTAACCGCACTGTCCACTCAAACAATCTCCAGACCTGCCGTGGGAAATTCTCGTTTGATCCTCAGGCGTGGTTGTTTTGGACTTCCGTCGCGTGCGTCGAAGATAAAACACAAAATCAAACGTTCCATTTCAGACAAGCCTTCACCCGATTCTGATAGAGAGTGTTCGACTACTCTCTCGGGAACTTTTAATTACTCTTCCTTTAGACACACAAAGGGGCGGTCTGTGAGTAAGTTTGATGAATAA

Transcript

PcrG014331.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02121 all species →	IP_trans	Phosphatidylinositol transfer protein	Family	Interproscan
PF02862 all species →	DDHD	DDHD domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR001666 all species →	Family	Phosphatidylinositol transfer protein	Interproscan
IPR023393 all species →	Homologous_superfamily	START-like domain superfamily	Interproscan
IPR004177 all species →	Domain	DDHD domain	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR031315 all species →	Domain	LNS2/PITP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10658 all species →	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005548 all species →	Molecular Function	phospholipid transporter activity	Interproscan
GO:0015914 all species →	Biological Process	phospholipid transport	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008525 all species →	Molecular Function	phosphatidylcholine transporter activity	Interproscan
GO:0008526 all species →	Molecular Function	phosphatidylinositol transfer activity	Interproscan
GO:0031210 all species →	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24069	PITPNM; membrane-associated phosphatidylinositol transfer protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.