Gene detail

Detailed information of PcrG014337.mRNA1 in Podabacia crustacea

Genomic Location: ptg000593l:551826...564954
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG014337.mRNA1

CTCACGTGTGTGTGAAGAAATATAATAATTGAGTGAAAATTTGTGTTTTCTCTCGTATTTTCGCGTCTTTCATCATGGGTATCCTTGAAAAAATCGCCGAAATAGAAAGTGAGATGGCGCGAACGCAGAAGAACAAGGCAACAGCCCACCATCTTGGATTGTTAAAAGCACGACTGGCCAAGTTACGAAGAGAACTGATCACTCCAAAAGGTGGAGGGGGAGCAACAGGAGAGGGATTTGATGTTGCAAAAACTGGTGATGCTAGAATTGGTTTTGTTGGATTTCCATCTGTTGGCAAGTCAACACTCTTGACCAACTTAGCTGGTGTGTACTCTGAGGTGGCTTCTTATGAGTTCACAACTCTCACCACAGTACCTGGTGTTATTCGGTACAAAGGAGCTAAAATACAGCTCCTGGATTTACCAGGAATTATTGAAGGTGCCAAGGATGGTAAAGGAAGAGGGCGGCAGGTGATTGCAGTTGCCAGAACCTGCAGCTTAATCTTCATAGTACTGGATGTATTAAAACCTCTGGGGCACAAGCGACTGATTGAATATGAACTGGAAGGTTTTGGGATAAGGCTCAACAAGGAACCTCCAAATATTACATTCAGAAAGAAGGAAAAGGGTGGAATAAATCTCCAAACCACATGTACTCAGTCAGAGCTGGACATTGATTCTGTGCGATCCATCTTAAGTGAATACCGCGTTGCTAATGCAGATATCACCCTGAGATATGATGCCACTGCAGATGACCTCATTGATGTCATTGAAGGAAACAGGGTTTACATTCCTTGTATTTATATTTTGAACAAAATTGATCAAATATCTATAGAAGAGTTGGATTTAATCTACAAGATCCCACATGCAGTTCCATTATCAGCTCATCACAAGTGGAATTTTGATGATTTATTAGAAAAGATATGGGAATATCTCAAGCTCATTAGAATATATACAAAGCCAAAAGGTCAGCTACCAGATTATGAGGCACCTGTGGTACTGAAAAATGGCCAATCATCTGTGGAGGATTTCTGTAACTCACTACACAAGAGCATCATGAAAGAATTCAAACATGCTATGGTTTGGGGCTCATCTGTTAAATTCAGTCCACAAAAAGTTGGTAAAGAGCATTTACTGCAAGATGAAGATGTAGTTCAAGTAGTCAAAAAAGTGTAATAAGAGAACATCTAAAGAAGTTTCAAGTCCTTGTGAAGTCAACTGAGATGAGAGATCTGTATAGAAATGGCATCATTAAATTCTATAGACTGATCTTTACTTTGTAAAAAGCATTTAAATAATATTATTGTTAAAAGATGGCTTTGTGGTCAAAATGGATTTAACCTTATCAAACCTGAAAGATGTAGTATGGGATTTACTCGTATTTAACAATAGCTTGTGTACTGTTGTCCTGTTATCGTGTACTCCTGATTAGTCTATGTTATCCTGCACTCAAAATGTTTGTCTTCCCATGAGAGAGACATCTGCCATTCAACTCAGTTCTAAATAGTGTACGCTGTTAGTACAGCACTAAAGCAATTCATGTGATGTCTGAGACTGCTAGCTGCTCTGCTTTGAATTATTTACAGATGACAAACTATGTTCCCAATAAAGAGTTTTCGATTCAAATCTTAGACTTCTCAAAGGGAAACACTGGAGAAAGTAAAGGACACACGTGCTCTCTCAGGCCACAAGAATGTGCATCAGATAGAATGTGTCTGCACTAGGAAAGTGACATTAAATACAGCGATATGACCTCATTAGTCATCAGCTGTCCCAAAGTATTGTCAAGGTTATCGAGGTAATGGTTAATCACTGTTGTGAATGAAGGGATGAGTAATCTTCTTTGTACTAGTAGGTTTTGACATTTTTTTATGTTTCTCAGACTAGCAGAAAATGATTTAGAATTAATTCTGTATGTCCACACTTGGTGCCTAAGCACAAGATCCTCAGTGTAATTAAAAGTGCTATTTTCACTGCTGGATATGAGTTCTCAACCATGTACTCAGGCATGGGCACCATGCCTTAAATCCCATGGGTACAGTAAACTCTCCCTTTAGGACATTTGCGCtaattgtttctgcgcattcctactgcacacgttattcatgttacaatgtcacgccatgtcatgcatctagtgcgc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926 all species →	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF16897 all species →	MMR_HSR1_Xtn	C-terminal region of MMR_HSR1 domain	Family	Interproscan
PF02824 all species →	TGS	TGS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006073 all species →	Domain	GTP binding domain	Interproscan
IPR012676 all species →	Homologous_superfamily	TGS-like	Interproscan
IPR004095 all species →	Domain	TGS	Interproscan
IPR031662 all species →	Domain	GTP binding protein, second domain	Interproscan
IPR006074 all species →	Conserved_site	GTP1/OBG, conserved site	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR031167 all species →	Domain	OBG-type guanine nucleotide-binding (G) domain	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045001 all species →	Family	Developmentally regulated GTP-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43127 all species →	DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0002181 all species →	Biological Process	cytoplasmic translation	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06944	DRG, RBG; developmentally-regulated GTP-binding protein	EC:3.6.5.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.