Gene detail

Detailed information of PcrG014528.mRNA1 in Podabacia crustacea

Genomic Location: ptg000604l:347788...354453
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG014528.mRNA1

GGTAAAACAAGATGGCGGATGCAATGGGTTTTTGGGGAAAGATTCACTGTAGTGCCACTGTTAGCTGAAACTCCCCTTCATCGACTTTCCTTAAGATGCCTTCATTTGCCCAAATTGTCATTGGCCCACCTGGATCTGGTAAAAGCACATTTTGTGCTGGGATGAGCGAATTCTTAACAAGTATGGGGCGAAAAGTTGCGGTAGTGAACCTCGACCCAGCCAATGACACACTTAACTATAAATGTGCAGTGGACATCTCAACGCTTATTACTCTCAACGATGTAATGGAGAACCTCAAGCTGGGCCCAAACGGCGGACTTATATACTGCATTGAATATCTGGAGAAAAATATTGACTGGCTGGAAAATAAGCTCAAAGAATTGAAGGGCCATTACTTCTTGTTCGATTGTCCTGGCCAGGTGGAACTCTATACTCATCACACATCCGTCAGAAATGTTGTGAGGCAACTGGAAAAGTGGGAATTTAGACTAGCAGCAGTTCATCTGGTCGATTCGCATCACTGCAGTGATCCTACAAAGTTCATTTCAGTTCTTCTCACATCGTTGTCCACAATGATTCATGTTGAGCTTCCTCATGTTAATGTACTGTCCAAAATTGACCTGGTTGAGCAGTATGGGAAGTTAGCATTCAACCTAGACTTTTACACAGATGTTTTGGATCTGAATTATTTATTGGAACACATCCAAGACAATCCATTCACACAGAAATACAAAAAGCTGAATGAAACTTTGGTTGGTTTGGTGGAGGATTATGGCTTGGTGTCTTTTAAAACTCTGGACATTCAGTCTAAAGAGAGCATGTTTGAGGTGATGAAATCAATTGACAAGGCTAATGGCTATGTGTTTGGTGAACTCGAGGACAACAAAGGGAACTTTAGCCAACTGATGTCTTCTGCTGTAGGAACGGATTTTGAATTCTTCAGAACTGCAGCGATTCAAGAGAAGTACATTGAGGATGATGACGGCAAGCAGTAATCAACAACAATGCAAATAATCCTCAAAATGGCACTGCCCGACGCCAAATAAAAACATTTTCCTTAACTTTAGACCTGTAATGTTTAAGTCAAGTCCCTTAACAAAGTTACCATGGGAAGTATATGGAAGATAAGGAAGATGGCGGAAACTGTGAACAGCTTGCGTATTTAACGATGCTTAGTTTTTCCATGCCATAACGCTTGTGAACTTTTCTTACATGGTCTCTAAAATGCAAAAACTTAACAAAGTAATATCCCTTTCTGTAATTACTAGTAGCTGCTGGCTCGAAAACTGTGCGTCTTTGATAAACCCTGGTGTCAGTAATGGTCTACTCATTTAGtatagcctattatttttcctgatcttttatatcttgtattatatcttataAAACGTCGTTCTAATAGGTTGAAAAACTGAAAACTGAAAACGTTGACTTAATAAAGAATAAAATACCGATAGCTCAACAAGACAAAAGAAATTACAagtaaattccttagtcacatgcgacgtacaaaactgaactttGGGCTTGAAAGCGGTTTTGGCGGGAACTACGCACCTACGACCTACCATGTCGCGGCTAGATCGGCTTTGCCGTGCGAACGACGCGATAAAATCGAGGTAATTAAAGTTGATGTGTTTCCCTTCGCGAATTTCCCATTTTTTGACAAGTTTAAAAATGATAGGAAATTTAATTTATCGAACAAATATTTCGCTCGAAAGAACATGTTCATTCAAGTAAACATATTGAGAAAATATTAGCTTGCCACAAACGACTCGTGGAAGGTTTAGGCCAAGATCAATCAATTTACATAACAATATGTTTCTTTGTATCCCCAAAGAAGGATTTTTTTTTCAATTAATTTACTTGAAACGTACTTCTATTCCGGGCCCTTTTCTTTTCCGTTAAGTTGAATTTTTCTCTGACCAAGGAGACCTCTAGCATGTCCATATATAAAAAAATGAAATATATGCTTCTTTAATTTATACTGTTGGTCATTCTTTCAAGCATTGCGTTGGTAACCATAAGCTACCACAGAATCTCACCATCCCTTGTAAAACTAAACAATAAAACCCGAAACAAAAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03029 all species →	ATP_bind_1	Conserved hypothetical ATP binding protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004130 all species →	Family	GPN-loop GTPase	Interproscan
IPR030231 all species →	Family	GPN-loop GTPase 2	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21231 all species →	XPA-BINDING PROTEIN 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24104	GPN; GPN-loop GTPase	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.