Gene detail

Detailed information of PcrG014617.mRNA1 in Podabacia crustacea

Genomic Location: ptg000614l:49381...87727
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG014617.mRNA1

ATGACGGCTGAGTGTCTTAAGGAAATCGCAGACCTTTACCTCAATCTTGACCAATGTCAAATGCGGATAGACGAGACTGGAGATCCAGCTGATGAAATTATGGTCGAGCCGTTGAACAAATCTCACGAATATTATGAAAAGGCACTGTTGATGATGAAGGAACTGGGTGTTGACAACCACAAGGAAATTATTTTGACTCTTAAAAACTTTGCAATATGTCAGCAACAGAGAGGAAATTTAAAGGAAGCCACAGATTTGTTTCAAAAGGCAGAGATTGTCGCAGACAGAGAATTGGAGAAAGATCATTTGCGGAAAGTCATGTTGAAAATTAAAGTGGCTTTCCTCTATgaagaaaaatatgagaaggaagaagaaggaagcaacgaaaaagCTCTAGTATCGATGAAACAGGGGCTTGAGATGGCGAAAAGACTTGGAAAGCAGATAAATCAGCTGAACGGCAAGGCTGAAATCTTAGCATTTGTAAATCGATATTCGGATGAGTTTCCAGAAGACAAATTTCCTCGTAAAAGTACCGCCAGTTTAGAAGCTGAGCACAGTGCGAACGACTTAGCTACTACTTCTTCTTCAGAATTTGATGCTAGTCATCTTGCCGCAAGAATACAATCGAAGAAGAATGGCCACGGCTCAGGTTCCAGCACACAAACCTATAGGTCACCACGCCTTCTACGTAACACTGAAGTACCCGGAAAAGTTGACAGTCGATATAGTCTACGGCCCAACAATGTTCCCCAAGCTGATGACCCAAGGACAACTGTGGGAAGAATACCAAGAAATCGCCCCAAGCACTATTCAAACAACCCGCTAGGTGAAGGCGGCAGAGGATATGGGGCAGGGCCAATATCTACTAGCAACAGGTATTCAGCCTTGGCAATAGAGGAAAATCTCTCAGCACCTATAGAACAAAAGGATGTTAGTGACTTCGATCAACAAGAACCTTGCAGTCCTTTGGCTAAAGCTGGAACGCCGGAAAATGTTCAGTCAGGTGGAAGAGATCGACGTGTGCGACTAGAAACACAGCCAAAGATCCCTGGTTCAGCCGGCGCCGGTCAGCACTTTGCTGGAAAACAAGAGGAACTTAGGACTTTGATATCGAAGAAAAAAGCGAGCAACAAAGAAGTCTTTGTTTGGATCAATGAAAATGTCTCCTTTGAGGACACAAAGGGAGCTCCATTCATTAGAGCCCTGGTAACAGCTGTTTGTGAAGATACAATGGATAGAGATGAAGTGGGCCAATGTAAATGCAACAACAGTCGCCTCAAGGACAGAAAATTTCTCCTGCAAACGTATATTGATGACAATACAAATCTCGAACTTCAAGCTCTGTATGCAGTGCAGGCACTTTTTGTTAAGCTGGATCACCCAGCAGGTTTCATCAAGTCATATTTTGACAGCTTTTATGACGAGGAAATCATTACAGAGGAATCGTTTAACGCCTGGGAAAGCAGTTCTGAGGAAGAATGTGGCAAGGGCAAGGCCTTAGCTGCAAGTGCAGAGTTTTTTCGATGGCTTAGAAGCGCCGCAGAGGAGTTTGGCGACGAGAATAGTCCACGGCCCAACAATGTTTCCCAAGCTGATGACCCCAGGTCAACTGTGGCAAGAATACCAAGAAATATCCCTGGTTCAGCCGGTCGACCCTTTGCTGGAAAACAAGATGAACTTAGGACTTTGATATTGAAGAAGAAAGCGAGCAACAAAGAAGTCTTTGTTTGGATCAATGAAAATGTTTCCGTTGCGGACACAAAAGAAGCTCCATTCATTAGAGCCCTGGTAACAGCTGTTTGTGAAGATACAATGGATAGAGATGAAGTGGGCCAATGTAAATGCAACAACAGTCGCCTCAAGGACAGAAAATTTCTCCTGCAAACGTATATTGATGACAATACAAATCTCGAACTTCAAGCTCTGTATGCAGTGCAGGCACTTTTTGTTAAGCTGGATCACCCAGCAGGTTTCATCAAGTCGTATTTTGACAGCTTTTATGACGAGGAAATCATTACAGAGGAATCGTTTAACGCCTGGGAAAGCAGTTCTGAGGAAGAATGTGGCAAGGGCAAGGCCTTAGCTGCAAGCGCAGAGTTTTTTCGATGGCTTAGAAGCGCCGCAGAGGAGTTTGGCGACGAGAATAGTCCACGGCCCAACAATGTTTCCCAAGCTGATGACCCCAGGTCAACTGTGGCAAGAATACCAAGAAATATCCCTGGTTCAGCCGGTCGACCCTTTGCTGGAAAACAAGATGAACTTAGGACTTTGATATTGAAGAAGAAAGCGAGCAACAAAGAAGTCTTTGTTTGGATCAATGAAAATGTTTCCGTTGCGGACACAAAAGAAGCTCCATTCATTAGAGCCCTGGTAACAGCTGTTTGTGAAGATACAATGGATAGAGATGAAGTGGGCCCATGTAAATGCAACATCAGTCGCCTCAAGGACAGAAAATATCTCCTGCAAACGTACATTGATGACAATACAAATCTCGAACTTCAAGCTCTGTATGCAGTGCAGGCACTTTTTGTTGAGCTGGATCACCCATCAGGTTTCATGAAGTCGTATTTTGACAACTTTTATGACGAGGAAATGATTACAGAAGAAACATTCAACGCCTGGGAAAGCAGTTCTGAGGAAGAACGTGGCAAGGGCGAGGCCTTAGCTGCGAGTGCAGCGTTTTTCCGATGGCTTAGAAGCGCCGCAGAGGAGCTCCTTCGAAGGAAAACGAACGGCACGAGGTTGGCACGATTGCTGGTTGACGGAGGAACGGAAGTTCTAAGAAAGAAATTGTATTCCATCCATCCACCCGACACATTAGAACAAAAATTGAAGGACAACAAAGATACCAAACTAAAGCGGGTGTTCGCAGATCAAAGAGAGAAGTTGTTCCCCTCTTCCGGTTCACCACAACTTAATGCATTTGACATGACACTTTTATATGTGTTACTTCAGAAAATCTGCGATCTAAAACCACCGGCATCCACGGGATGGAAAGAAATGCCTGCAGACAGTGTCCAAACTCCTGTAGCAAACATTGTCCGAATCAACTGTTTCAGAAATGAATACGGTCATTGGTTTTCCACCGGTATTCCAGATGACGAATTTGAAGAAAAATGGGAAAAGATTTCTTCAGCACTGGTGGACCTCGGATTTGACAAAGATGAAATAGACCGCCTGAAGACTGAACCAATTGATCATGAAACTCAACGACGCATAGAGGAAGTAAACAAATGGAAACGCCAATTTGAATCTCGACTGGAGGACGTCGAACAAAGGCAAGACAAGTTCGACCAAAGACAAGACAATATCAACGACCGAGTGGTTACTATTGAAAAGAAGTTGTCAGAAACCACCCTTAAACTTTCTAGCTGCCTTCCAGACGAAGTTCCACATGTATATGGTCGTTCGCAAGCGATACGTGAAGTCGTAGAAGCTATCCAAAGTAGGAACAACGCAGTTGTTTTAATAACTGGGGGACCGGGATTCGGAAAAACCACTGTGGCCAAAAAAGCAGCTCGCGAAATAGCCAACGCACAACATGGTAACATAGTGCTGTTCTGTAATTTAAGGTTAAAGAAAACTTTATATGAGGTAGCTACGTCAATGAGTCTTGTCTGTAGTGAACAAACGCAGCTGCCTGAGAATCCTCATCAATGGCTTCTGAATTGGAGCAAACAGCTAGAAAGAGCTGTTACTTTTGTCCTTGACAATGCTGATGATGTTCTCGATAGCGATGGTGGTGTTGAATTCTTTAGATTTTTAAGTGACATGAGAACAATTTCCAAACAGGTCACATTTGTGATTACCTCTCGATTAGACCGTGATATTCCCAGTCTACAAACCAAGAATGTCAGGTTGGGATGTTTGTCCATAGAAGATGCAAAGCAAGTTCTATTATCTCGAATTACCAATCCAAAGACTCAGCAGGGACTTTCTAAGGCAGACGAACTGGCAGGGCGATGTGGCCGTGTTCCCATGGCACTTTGTATTGCCGGCTCTTTGATTTCGAAAGCTCTCTACAGCGAAGAGCAATTACTGAAACGTCTCGAAGAAGATCCCATGGGTGTTCTTAACAGTAATCGTCGACCCACTGTTGAAACGTCAGTTGAAGAATCAATCATGGCCTCAATGGAAGCTCTTGACAATTGCGAAAAACAAGCCCTTATCCTGCTGTGTTCTTTTCCTCGTTCATTCGATGCTGAGGCCGCCCGGTTTTTAATTGAATCGTGTTTAGCGAAAGCCCAAGACCAAGACATCTCGATTCTTACCGAGCTGATAGAGAGATGTCTGATAGAGCAGCTAGGGGCACAAAGATATGAAATCCATTCTCTCATTCAAGAGGCTGCGAAGAAGGTTGGTGAAGAGACCTATCCACAACTTTTAATTGAAGGAAATAAGCGGGCTTGTGTTCATTTTATATCACGTTTTACTAACAATGCAAATGTGCACTGGAGTAAAGACAAGTGCAAAGAGTCTTTTGAGTCCTTCAATAAAGACAGGCACAATTATGAGTATTTCCTCGAGGTCTACGTTCAAGAAAGGCAAAAACAAGTCCCTGAGATCATGGACGCTTGTAAAACCTTACTCGACAATTTTCCCCAGAAGTGCATGTTTTTAGAGATGTGTGTTCTTCCGAGGTTTTACATTTTGTTTCTGGAAAGGTTGTTGGAGACGTTTGAACCAGAAAGTCAACCAGTACATAGAGTAGAACTTTTGTGCCTACTTGGACATGAAAGAAGAAAGGAAGGAGACCAACCAAAGTACGAGAATCTTATGAAGGAGGCCGAAAAGGTTCACTCAACCAATTCTGATAAATTTGAAACAAAAGCGCTGTCAGAAGTCTTCTTTCGTAACAGTTACGCTCGATTTCTTTCAGAGAAAAAGGACCCCAGCGTAAACGACAGAATAGAGCAAGAAACTAAAATTGCCTTGAATGTCAGCAAGAGACAGCTTGGTGACCATCCAGAAACGGCAGCGACACTTTTATGTGCAGGAATAAACGCAAAGCGACGAAAATAA

Transcript

PcrG014617.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18738 all species →	HEPN_DZIP3	DZIP3/ hRUL138-like HEPN	Domain	Interproscan
PF00931 all species →	NB-ARC	NB-ARC domain	Domain	Interproscan
PF02020 all species →	W2	eIF4-gamma/eIF5/eIF2-epsilon	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR041249 all species →	Domain	DZIP3-like HEPN domain	Interproscan
IPR003307 all species →	Domain	W2 domain	Interproscan
IPR051956 all species →	Family	eIF2B Complex Subunit Epsilon	Interproscan
IPR002182 all species →	Domain	NB-ARC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45887 all species →	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005851 all species →	Cellular Component	eukaryotic translation initiation factor 2B complex	Interproscan
GO:0031369 all species →	Molecular Function	translation initiation factor binding	Interproscan
GO:0043531 all species →	Molecular Function	ADP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG014617.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.