Gene detail

Detailed information of PcrG014889.mRNA1 in Podabacia crustacea

Genomic Location: ptg000646l:1050724...1086569
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG014889.mRNA1

ATGGCGCTCCGTGCAAGGTTTTGTTGTTTTATCTTGCTCGTTGCTTTACCAACACTTGTCAGTTGCATTCGCCCATTTGCAGTCCCAAAGAATCTTTTCGTGCAAGGTACGTCGCCATTAACCTTACCAGAAGGAGCGCGTGTAATTCGGCGGGAAGCTCTCGAGCCGGACCCAGAGAGTCCACAAGAACTCGTAGAAGACCTTCATTACCGTTTTCGGCGAGATGTACCACCACCAAGCCCTAAACCAGAGCTGTCCAGTTATGCTCTTGGAACCTACGGCACTTATTTCATGTACTGGCCTCGGAGCAGTGGTAGCGAAAATTATGTGTTCTTGCTGGGGAAGAACATTAAAGACAAGACGCGCAGCACGGTTTTCGTCTCCAGAAACTACGGAAAGAATTTTACTAGTATGAACTTTACACTGATTGATCAGCTTTATTGTGGGAAAGCCGATCCTAAACTGTGCATTTTTGCTGACAAAGTGAACAAGAAACTCTATAGAACAGAAAACTTGGAGAATTTTCAACCTCAAAAAATTGCCTGGGAGCCATCGTTCTTGACATTTCATCCATGGGATAGTCATTTTGTTATGGGATATGATTTTCCAGCTGAAAAGCTCTACTTGTCAAATGATAGTGGTAAAACGTTTTCTCAAGTACCGGGTGAAGTGAAGTCATTTCATTGGGGTGTTAAAGATCTTGATCGGGCAGATGTAATTTTTGTAGAGGAATATCAGAAACCTCTTCAAGACCGACTTAAAACACGAGACAACAGAACCACAGTTTACCAGGTGGATAGCATAGGAAACAGGTCACTTGCGACTAACGTGGAGGAATTTGAAATGATGAAAATGTACATGTTTATCACTACAAGGAATGACCCAAAAGACAAAAACCCAATCTTAAAAGTTTCAAAAAATCGCAATGTATTTAAAGAAGCAACATTTCCAATAAACGAGGAAAGCAGAGACTTTTTTGTTTTTGATGTGGTTGAGGAACAGGTATTTGTTGTCATAAACCACTTGAGGAATCTGTCAAATATGTATGTCTCAGATCAAAGTGGAGTGAAATACCAGCTGTCGCTGCCAAGAGTTTTGTATCATAATCCATTCACCAATGTGTCATCTCCTTGGCTTAGAACTGTGATACCATATGCATTTGTTGACGTGGATAGAATCCAATCCATGCGCGGTATTTACATTGCCACTCAGTTAACGCCTGGTCCAGTCGGCAAGAGGCACTTGCTGTCACTTATCACTTACAACAGAGGCGGAAAGTGGCAGAGAATTCGTTCTCCAACTGTGGATAACCGTGGGGTTAGGATTAATTGTTACCTGCCAAGCTGTTCACTTCATTTGAATCTACTCTACGGTGCTGTGTATCGTGTATCTCCATCAGAGCGACTGCTTTCCAGTGAGTCTGCCCCAGGATTGGTGATAGGTTTAGGTGTGGCTAGTACTAATCTTAAGATATATCCAGACCTGTTTGTGTCATTGGATGGTGGTCTGGGGTGGAGCAGGGTTCTACGAGGGAAATATCTGTTTACTTTTGGAGATCATGGTGGAGTTATTGTTGCTGTACCATACAGACGCTACACCAAGTCACTGAGGTACAGCACCAATGGTGGTTTCACTTGGGAAACCTTTACCTTTTCTCCTTCGACAGCTATCCTTGCTCGTGATGTTGTCACTCAACCTGGGGAAAAATTGCCAATCTTTTTAATCTATGGAAACCGTGGCCGCTTTTGGACAGTGTTTTATCTTAATATGACAAATGTCATGGGTCCTGTGTGCGATTCTTCTGGCTTTACCAATTTTATCGATGGCTGTATTCTGGGCAGACAGCAGCAATTTGAGACCAGAAATTGGACCATTCATTGCCATGCAGGTCGGGACTACAAGAGACCATCAGGTATTAGGAACTGTCCTTGTACCAGAGATGATTTTCAATGTGACTATGGTTTTGAAAGAAAGAATATTGATGAAGAATGTACTCCTATCGAAAAGGAAGACTTGGATAATGAAATTATACCTGAAGACTGTCCAGAGGGTACAAACTACAGCAGGACTCAGGGGTTCCGTAAGATTGATGGAGACACATGTGTAAATGGAACTGAGAAGGACTTCTTGCCAGTTTCAACACCCTGTCCTGTCAAAGAGCTCAAGGGTTTTAGTTTAAGAGGGAAAGGTAGCAATGAGACTAGTGATGGTGGTGTTGCAGTTGAAACTGGGGGAACTGTTTCTTTTTTTACTAATCTTACAAAAGGATATCAGCCAAATATTATGTATAGGTGGTTTTATGGTGATGAAGACGGTGAGAAAGGAATGGGATCCAAATTTGCCAATCGACAGCACCTGTATCATAAGCCTGGAAAGTACATTGTGTCAGTTGTCGCATCAAATACTCAAAGTATTCTTGTGAAGAGATTGGTGGTgaatgttcaagAAAAACTTGCAGCGGATAAGGTGGTGATTAACTTTCATCCCAAAGATCCTGGTGTGGATGAGGATGTCATATTTTCTGCGAATCTCAACTATTCAAATGTAGAAGCTGGAGATGTTTTGTACAATTGGAAATATGATGAAGGAGAAGTTAAAGGATGGCAGCCAGTAGCTATTCTTCGCTTTCATAAAGCAAAGAGTTATCTTGTTCAAATCACAGCAGCAAATTCTGTAAACTCCATTACGAAGTCTGTTAAAGTCCAAGTCCTCAAAGACTTCACACCTGTGAATGCGACTGCAAGGGTTCTTGGACCCACACAAATCAAAGTTACATGGAAACATACTGGTGAAGCTGACCAATTTGTCACAGACCACCAAGTGTTTATCAGTACTTTAGGTAATGTTGCCTTCTCGATAGCAACCTGTACTGTAAAAACAAAACTATCATGTACTGTGGGAAGTCTTACTCCAGCTACTACATACTATGTCAAGGTGCAAGCTGTCGCTAATGGCAATGTGTCTGCATTTTCAAACATTGTAATCATCACTACCAATACCAGCACTCCTGGGGGACCAGAAGGTCTGAAGGCAACTGTTCTTAGTTCTTCATCCATTAAAGTACAGTGGAAACATCCAGCAACCCCCAATGGACGTATCACAAGTTACAGAATTCGATATTGGCCACACAATAACGTCAATGTTACTACTGTTAACAATGGCCTTTCATTATCAAGAACTATAACTGGCTTACAGCAAGATACTGTCTATTTCTTTGAGGTGTATGCAAATAGTGACTCAGGCCGCAGTATATCTGCAGGCCCTGTTCAAGCATTAACAAGTTTATCAACGCCAACTCTTCCACCACGTGAGATTAAGAAAATTTCAGACAATGGCACTTGCGCTATGCTACAGTGGAAGCCACCATTCCATTCAAATTCAGACCAAAGGCCATTTCCAGCCAAGGGTTACAAAGTTCAACGAACTAAGGATGCCAGCCTTCTTGATGTACCTTCAACCTTTGCAGTTGTGTGCAAGCTTACACCTGGAGCAGATCATGAATTAAAAATCTCAGCTTATTCAGATGCTGGTGAAGGGCCTGCTGCTACCATCACCATAAAAACACAAGTTATAAAACCTGATGCCCCTCAGAATGTACATGCCTCTGCAATGTCGTCCCAACAAATAGTGATACGTTGGAACCCTCCTAAACAGAGCAGTGGAACACTGACTGGATATGAAATCTACCAGTTAAGCCCTCTTAAAGACGAGCCATATGTGGTCTCAGCAGATAAGACATCCTTCACTGTTGAAAAGCTGGAGCCTTACACCACATACAAGTTTGCTGTTTATGCTAAAAACAGTCTGGGCTCTAGTGTCAGGGGTGCTGTTGTTACAGTTACCACTCATGAAACCTCCCCTGGTAAAGTGGAGTTTGTCACAGCAGAAACCATTCCACCTTACTCAGCAAGTATTAAAGTCACATGGTCTTCACCATCAAAACCAAATGGAGTCATCAAACAGTACCAGGTCAAGTGGACTAATACTATTGCTAAAGACCAAAGCACTGATGGTTTTGATGTTGTGACAGTAAATGGTTCAACCACAGCATACACATTCAAGCATCTATTCAGCAACACATATTATTCCTTTGTTGTGATCCCTGTAAATGGTGCCGGGGAGGGACCGCAGCACATACAACCAAGAAAGGAACGAACAGAAACAGCTCTAAAAGGCACAGAACGGCTCAGCTTGAAATTCGAAGGCCCTATCATGGATGGTGAAGACCTCTCAAGAGACTTTATTCCTCAATTCATTAAAGTTGGCAGTGCGAAAGCTAAAATATTGGAGGACCGTCTAGCTGCTATTAAGGTCGCGAGGAACACTGGAATAGCATCAGAGGGCAAAGTTTTGTTTGACCTCATCCCACCATTCAATGAGCAATCTGGTGCTTCTATGGAACAGGCTAAAGCTGCTCTCAATGAAGGTTTTAAAGCAAGTGATTGGACTCTTACCAGTGGCTCGTTAAGCACCGTTTCTGGAGAGGTCACTCCACCTACTCCGGGAGGAAAGCCATCAGTTGGCGCACAGAAAGGTGGCTCACCAGATGACGGCAGTCAAAAGAAAACACTTGCTGTTGCCATACCCCTGGCATTAATAGGAATTGCTTTGTTAGGTGGTATGATATTTTTCTATGTGAAATACAAATCGCTTGAGAAGCACTACAGAAAAATGAGCGACAAAGATCACGAAGAGGACGAGATGAAAGTTGTTTATCATGAGGACATGCAAGCAGACTCCCCAGATGTCATTTTTAGTGATCATACCAGAAAAGGAAAGAGTAAGGTTTACAAAAATGCAGAGAAAGTTCCTCTAGGTGAAAATGATGAACTAGCCATGATTTAA

Transcript

PcrG014889.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15902 all species →	Sortilin-Vps10	Sortilin, neurotensin receptor 3,	Repeat	Interproscan
PF15901 all species →	Sortilin_C	Sortilin, neurotensin receptor 3, C-terminal	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR006581 all species →	Domain	VPS10	Interproscan
IPR031778 all species →	Domain	Sortilin, N-terminal	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR035986 all species →	Homologous_superfamily	PKD domain superfamily	Interproscan
IPR031777 all species →	Domain	Sortilin, C-terminal	Interproscan
IPR000601 all species →	Domain	PKD domain	Interproscan
IPR003529 all species →	Conserved_site	Long hematopoietin receptor, Gp130 family 2, conserved site	Interproscan
IPR022409 all species →	Domain	PKD/Chitinase domain	Interproscan
IPR050310 all species →	Family	VPS10-related sortilin family receptors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12106 all species →	SORTILIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004896 all species →	Molecular Function	cytokine receptor activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006892 all species →	Biological Process	post-Golgi vesicle-mediated transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG014889.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.