Gene detail

Detailed information of PcrG015029.mRNA1 in Podabacia crustacea

Genomic Location: ptg000663l:280689...296009
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005112 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01106 all species →	NifU	NifU-like domain	Family	Interproscan
PF08712 all species →	Nfu_N	Scaffold protein Nfu/NifU N terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036498 all species →	Homologous_superfamily	Scaffold protein Nfu/NifU, N-terminal domain superfamily	Interproscan
IPR001075 all species →	Domain	NIF system FeS cluster assembly, NifU, C-terminal	Interproscan
IPR034904 all species →	Homologous_superfamily	Fe-S cluster assembly domain superfamily	Interproscan
IPR014824 all species →	Domain	Scaffold protein Nfu/NifU, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11178 all species →	IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016226 all species →	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0097428 all species →	Biological Process	protein maturation by iron-sulfur cluster transfer	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22074	NFU1, HIRIP5; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.