Gene detail

Detailed information of PcrG015358.mRNA1 in Podabacia crustacea

Genomic Location: ptg000774l:404664...416406
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006490 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04900 all species →	Fcf1	Fcf1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037503 all species →	Domain	rRNA-processing protein Fcf1, PIN domain	Interproscan
IPR002716 all species →	Domain	PIN domain	Interproscan
IPR006984 all species →	Family	rRNA-processing protein Fcf1/Utp23	Interproscan
IPR029060 all species →	Homologous_superfamily	PIN-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12416 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14566	UTP24, FCF1; U3 small nucleolar RNA-associated protein 24	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.