Gene detail

Detailed information of PcrG015932.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_101:1700490...1705320
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG015932.mRNA1

CTGCTTCATATTAGCCAAACACTTTTTGCCATGACCCATGAAACTTGGAGAAGCGATTCCAAGATGGCGGTTTCTGTTGGTCTTGCAAGAACAAGAGTGAAGATTTTCCAGCCTTTTCTGGGCTGTGTGAAGAATAACCTTGCTCTTTTAGCTGCATCACAGGTTCCAAATGTTTTTCCATGTTGTCATCGCAAAACACAAACACCCCTTCCTCTCCACTACAAATATCTAGACCGGTATACATACGGAATCTATGCCAAGCAGCCTGCCCTCATAAAAGACTGCGCACTGGAGTCTGCACGCTTGGCCATCACCAGGGCAACAAAAACAAAAGAGATGTTCATGATTAAAGCAGATATACCAGTGACAAGAAAACCACTGGGAAGCAAAATGGGAAAAGGAAAAGGCAAATTGGATCATTATCTGGCTAATGTTATGGCTGGCAAGGTCATTTTTGAATTTAATTGTGACAGTGAAACTCAAGCTTTAGAGGCTTTCAGACAAGCCACATACAAACTTCCAGTCCGCACCCAATTGAGGGTTAAACCTTCAGGGAAAAAGGACATCTGGACGGACTTCTGAACGATGTGAATAAGTCGTATTGCATACTGTCTGCTTGGTGGATAGAAGACATGAGGGAACCTTGCCTCACCACTCCATCTACCCATCCCTCAAGTAAGATAGAGTGCATAATAAACCTTTTGTTCTCTTTTTTCTTGAGAAATTACAAGAATATCTAAATGGCATTCTTAGCAAGATGTTGTAAAtacagtcgaagctcccttaacggacactctcataagcggacagctctacctacgaccaccaagtcaaaaccccgttttattcaactcccatacaaactctgtattttcacattctccttagcggccatctccagttatggacacttttttgcgcccctagggtatccacttacgagagctttgactgtacCATACTCTTGTTGAAAAGAAAAGCAGGCCAAAATATGAAATTTTGAAAAACGTGAATAAACATGTATGGAAACTTAGTTTTTAAAAAGAAACAATTGTGCTGCTTCGTCAGACaattgaaacactctgttgattgtcttctgcaagttgataaaggacaatgaagtacagtagcgaattttgaaaagctgactttcctagtgtcgtcattcctcagagcTTTTTTCGACTTCCAGTTGACATTCAACCAAGTGCTGCGGTTTTGTTTAGTTTGATCATCATTAGTTCTTGGTTTCCGGGGAGTTCATTTTTGATTTTCTAATGTTTTGAATAGTTATTAGCGATTTTATTCAATTATAAGATGAATTTATTTTTATGTCAAAAAAATTGCATAACAATGGGTACATGTAACCGAGTTCCTTTCATAAAGCAAATGTTTGCTAATAGTCAGAAGAAAAAAGAAAGTTATGCTCCAGAAGACAGGAATTGTTATTTGCATCTTTTTGATTAAACAACGAATTGTGCCCGCAAGTGTTATCTTAAGAGCTTTGTGGCACGAGGGCATTTGTGTCTTTGATTGTATATAGCCGGCCAGGTAAGTGGCTTGGCAGGATTCCTGCAGCAGTGAGCATGAAGAACAGGAAGAACAACCCGGTGAAGGGTCAGTTATGCCTGGAGAAAACGAGCTGCTCTGCTTAAAACCTTTAACTTACAATTCGTTCTTGCTTCTAAGAAAAGTTTTGGCTTTCTCTCAGCTGCGTCACTTGTGCTCATCACAGCTTTAGGGACCCAATTCATTTTGCCAATTGTGAAATAATGACGTTACACACTCAATCAGCTCGTGACTGAGCTAAAGAATTCCATCAAATAGAGGATCTTGTTTTGGTGTTCTGCTAGAGTTTTAGAGGTAGAGGACTGGATATTTCAAGCTGGCTTGGGACTTTGCTATTCCACTCCtcccttcccttcccgttacctcccccttcTTGATTTAGTTTTCGCACGCGCTTGGCATTCTTTAAAAAGGAAACGTAAGCTTAGACTCCATTCACGCGCTACTTGGAGCTAAAGTCGAGTTGTATCAGCTTTTGGCGCCTGAATCTCTATATTTTGGTTCTTGCTGGAGTTGTGGAATTATTCATGAATACCACATCAATTATTTGGTCACCGTTCTGCGAGATGTTTGTAACTTGATTTGTAGTGTATTCTAAAAAAAAAAATTTCATTATCCTTTCACTTCCAAGAGACCTTAAAAAGTTTCGAAACACTGCTACATCGTAGTTTACTGCTAAATAGTTTCCTTTGAATTGTTAATTATAAACATACTGGGAAGTCATCTGTGCACATATTGTAAAGATGGAACAATCTTCTGGtgctcaattgcttttatttgaatgaccacaatagggtttcatcgacgaatataaccacgttagTTGTATGTCTCGAGCCGTTCGTCT

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006607 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00252 all species →	Ribosomal_L16	Ribosomal protein L16p/L10e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000114 all species →	Family	Large ribosomal subunit protein uL16, bacterial-type	Interproscan
IPR016180 all species →	Domain	Large ribosomal subunit protein uL16 domain	Interproscan
IPR036920 all species →	Homologous_superfamily	Large ribosomal subunit protein uL16 superfamily	Interproscan
IPR047873 all species →	Family	Large ribosomal subunit protein uL16	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12220 all species →	50S/60S RIBOSOMAL PROTEIN L16	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02878	RP-L16, MRPL16, rplP; large subunit ribosomal protein L16	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.