Gene detail

Detailed information of PcrG015961.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_101:2088483...2104347
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG015961.mRNA1

ATGGTGAACGGAGTGAACGTTTCGAGGGAATTATTTATTTTTAATATTTTCGGTGTTTACGTCTCGTTAGTGTGTTCTTACTTCAACGTAGAGGAAATTTATGGTGTCAAGTATGGATTTGAGATTTCAAGCGAGCCAGTTCTTTTAAAAGAGAGTCCAGACATTGAAAATACATTGTTATTATCGTCCAAGCATGGACAGCAATACCAGTGTGTTTTACCACAACTGGAGAGTTTAGAAAAAAAGAATGAAGAAGCCCAACATATATCTAAAGATGAAATTCCTCAGCTGTTAGAACCAATGAAGAAAAAATGTTCGTATAATAACAAAGGGTGGTGGACATATGAAGTATGTTTTGGGAAGGGAATTTATCAGTATCACAAAGAAGCAAATGAAATTGTTGGAGATAAAATTTCCCTAGGAGTATTTAGTAACGAAACAGATTGGAGTCAAGAAAAAATAGACGTGAAGGAAAAACCCAAACCAGGAAAAAGTGCAGTGGCGAAAAGATATCATTCCCAATATTATGTTAATGGCAGTGATTGTGATTTGACTGGAAAAGCAAGAGAAACGCAAGTTAAGATTTATTGTGATGAAGGCATTGCAGATGTAGTAATAAGAGTGGATGAACCATCGTCATGTTCCTATGTGATAACAGTGCATACAAACAAGCTCTGTCAGCATAGCCTGTTTAGGCCCAGCCCTGCACAGAAACCACAGTCCATCACCTGCTCACCTGCACTGTCAGAGGAACGTTACAAGTTATATGTAGAAAAAATTGCATCAAAGAAAAAAGCCAAAGAGGAAGCTAAAGCAGCCAGTGTTCAAACACAGAAAGCAAGAGCTGCAAAGAAAATTGAAAGTGAAGATGAAAGTCTTGAACAAGATGAAGAAGAAAGTTTGGCAAAACAAAGAAAAAAGTCGAAACGAAGCCAGGTTTGGCCGTGGGAGAACCCAGGAGTTGAATATGAAGATGAGATGTTTATTGATGGAAAAATTGAGCAAGACGAGATTGGTGTTCATAGATTGGACATCACCAAAGGAAGGAAAAAAACTGCAAGCGGGCATCATGAAGAGGAAGGTATTACTGTCATGAGTCAAAAGATGCAAAGGAGGAGAGAACCAGACAACCAAAGGCAAAAAGGAGAAACTGAAGACACCTTGAAGGAAACATCTGAATATGAAGATGAGCTGAAACAATCTGACAAGACAGAGAAAAGTGACGAGACAGAGAAAACAGATGAGGAAGACAAGAATAAAATATCTACTGAAGAAAATGACGTACAGGAAAACAACGGAAAGAAAGCTACATCAGAGGGCGGTGCAGGAGAGGAGGGCATGGAATCAAGTGAGACTGCAGATGATGACAGCAAAAAGATGGAGAAAGAAATTACTGAAACAGACAAAGATTTACATGACGAGTGGAAGAAGAAAATGGAAGAAGCAGTTCTGAAGCTGAGATCTTCTTTGAAGGAGAAATTAGTCAAGCTAGGAATCAAACCTGAAGTTTTGGATCAAAAATTCGAAGAGAAACTTGGAAGTGTTAGTGGTAAAGCGGGCGAGAAGGACGAAAGTCCCGCGGGTGAAGAAGAAAGTCCCTCGGGAAAAGACGAAAGTCCCGCGGGAACAGATGATGTGAAAGCTGACAGACTCAAAGAACAAACCGTGGAAGGACAGGAAATGGAACAGCCAGAGAAGACCTCGCAGAAAGATGCGTTTGCGAGAACAATTGACGAGATAAGAAAGATTTTAAAGGGGGATATGATGAAGGAAATAATGGAAGCTGCTTCTACAACTCAAGCTGAGATGGAAAGACAGTTTAACGAGGAACGTGCTCAGATGAAGACTGATGTTGAACTTATTAAAAACAAGATAAAGGAAATTGAAGAGACGGAGGAGAATACTGGCGTAAAAGATGCACAGCTTGGAGAAACGATGAGTAGAGTAAAGGACTCAATTGATCGCTTTGAGAAAACTAACATGGAATTGGATGAAGACATGCAGTCCATTAAAGAGCTCAATAATGAGATATACCGTATAGTAGAAGACAAACAAGATACAGATGCCAGAGGCGATCTCTTGCAACTCTCTTCCAAGACCAGCAAACTGTTGAGAAAGATTCTTTTGCGACGTTTCCAGCTAGAGCAAGACCTCCTCTACATAAGGAGAATGCGAAGCAAAATTTCTGGCAGCGAAGAGAAAGAACAAGCAACGGATAACGCGGAATTTGGTGCTACAAAAGGTGGCATCGACCAAGTCATTAACAAGTTGAAAACTATGATTCGAGATCTGGACAACCCCGAAGCCGGAGCTGGAGGTGGGGTGGGTTCTGATGATACCCCAGGGATTAAGGCAGGGAGTCCTCGCACTGGCGCTGGTGTTGAGGACGGAGATGCGACCGCTGAATCAGACGGGTATGATCAGGGTGACTTTGGCACAGGAGTTCGGGTCAAAGTGTCCAGTATTAAGAAGATTAACATTCCTGATGACGACGAGTCGGAGTTGGAGGAAACAGATCTTGATGAGGAGGAAATGGAGGAGTTAAATATCGACAAACGAATTCGCCAAGCTACAAAGAAAATGGAGGAGATGGTGAAGCAGCAACTAAGGGACTCGGGAGTGTTGCCTTCAGGCAAGATACGAGTCAAGATCGTAACATCCAAAGACGCGTTGGAGAGTTTGGATGGCAAAAGTGACGGGAAATTACTCAGCGAAAGAGAAGAAACCCAGTTTAAGGACATGATTCTTAGtttattgGGAGGCAGCCCTGAAGCTGGAAAAGAGAAAAAGCGTCAACAGGATTTAGAGAACAACTACAACTTAGTGTGGACTGACGATGAACTGCAGTCGGTCCCACGAGAGGACGATGAGGCGGATGGTGAAGTCGAAGTGGTATCTTATTAA

Transcript

PcrG015961.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07915 all species →	PRKCSH	Glucosidase II beta subunit-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045149 all species →	Family	Protein OS-9-like	Interproscan
IPR009011 all species →	Homologous_superfamily	Mannose-6-phosphate receptor binding domain superfamily	Interproscan
IPR044865 all species →	Domain	MRH domain	Interproscan
IPR012913 all species →	Domain	Protein OS9-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15414 all species →	OS-9-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005788 all species →	Cellular Component	endoplasmic reticulum lumen	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0030970 all species →	Biological Process	retrograde protein transport, ER to cytosol	Interproscan
GO:0036503 all species →	Biological Process	ERAD pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10088	OS9; protein OS-9	-	Lectins	ko04091	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.