Gene detail

Detailed information of PcrG016303.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_103:3787647...3822924
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG016303.mRNA1

ATGTATGCGATTTACAAACAGGCTCACCCTCCCACAGGAGTTGAACATTGTGTATGTTGTCAGTTTTTCTCTTCAGTGGAAAACAACCTTGTTGTGGCAGGGACATCACTGCTTAGGATTTACAGATTTTATACGCAAGAcgagCAACATGCAGTAGGCGCGATATCCTCAGATAAGGCAGCAGACAGTACTGTCAAGAGAAGGAAGTTGGAGCTGCTCAGTCAGTACTCCTTGTTTGGTAACATAGAGTGTCTCCAGGCTGTAAGATTAGCTGGAAACTCAAGGGATTCACTCTTATTGAGCTTTAAAGATGCTAAGTTGGCTATAATTGACTATGATCCTGGCACTCATGATCTGAAGACAAGAAGTTTGCATTTCTTTGAAGATGACAAGATTATAAAGAGCTGTAATCAAGAGTATTATCGACCTCCTCTTGTGCGTGTGGATCCTGAACGGCGTTGTTCAGTGATGTTGATCTATGGAACACATCTTGTGGTTCTACCATTCAGACAAGAAGGAGTGTTAGATGAACATGAACAAGAAGCTGTTTTTACAGCAAGTGGAGATCGTTCTCCTCTGTTACCAAGTTACACAATCAACTTAAAAGACATCCATGATAAGCTGTGTAATATAATAGATGTTCAGTTTCTGCACGGTTACTATGAACCAACCCTGCTACTCCTCTATGAACCATTACAAACCTGGCCAGGGCGTCTTGCTATGCGTCATGACACGTGTGCCTTGGTAGCTGTTTCTTTAAACTTGTCTCAGCGAACTCATCCAGTTGTGTGGTCTTTGAATAATCTACCATTTGACTGTAATCAAGTTCTCGCTGTTCCCAAGCCGATTGGTGGAGTGTTGGTTTGTGCTACAAACTCTCTGTTATATCTGAATCAAAGTGTTCCTCCACACGGCGTCTCACTGAACAGCATTGCTGATCACAGCACAGACTTTCCTCTTAGACCCCAGGAGGGCGTGGTTATAACCCTAGATGGCGCCAAGGCAACTTTCATATCATCTGACAAACTTGTCTTTTCGCTCAAGGGTGGAGAGATTTATGTTGTCACCCTGGTCGCTGATGGAGTACGAAGTGTGCGGAATTTTAATTTTGATAAAGCAGCAGCAAGTGTTCTCACTTCATGTGTTTGTGAGTGTGGAGATGGATATTTGTTTCTTGGATCTCGACTTGGCAACTCATTACTTGTCAAATACACTGAAAAAACTGAGGAATTAGGTACAGAGCCTGATCTTTTCTCACCTGGATTGGACCCACCTCAAGCCAAGCGGAGAAGACTGGATACAGACTATACTTATGCTTTAGATGATCTGGATGAGTTAGAGGTGTATGGTAAAGAAGAACAGTCGGGAGTCAAGCTAACATCATACACATTTGAAGTATGCGACAGTTTGCTTAACATTGGACCTTGTACATGTGTTGACATGGGAGAACCTGCTTTTCTATCTTTTGCTGGTGGTAAAGAACTGGATTTAGAACTTGTGTCATGTTCTGGGTATGGAAAGAACGGAGCATTATCTGTTCTGCAGAGAAGTGTTAGACCTCAGGTTGTGACAACATTTGAGCTGCCTGGATGTGTTGACATGTGGACAGTCTTATCAGGCGATCAGGGTGGTGGTAGTTACCACTCGTTCCTTTTATTGAGCAGAGAGGATTCAAGCATGGTGTTGAAGACAGAGCAAGAGATTATGGAGCTTGACCATTCAGGTTTCACATCACAATACCCAACTGTGTTTGCTGGAAATCTTGGAAATGGAAAATATATCTTGCAGGTTACTCCTCAAGGTGTCAGATTATTAGAAGGAGTAACACAGCTACACCACATTCCTCTGGATGCCGGCCTGTCATCCATTGTTTGGTGCTCACTGTCTGATCCTTATGCAGTGATGATGACAGCTGATGGTTCTATTATTCTACTTGAGTTTACATTAGAAGGTGCTGAGCCAAAAGTCAAGATATCCAGACCACAGATCAACCAAGGTGCTAAGGTCTGTGCATGTTGTGCATACAAAGATGTCAGTGGGATATTTTCAACAGAGAAGGTTGAGCATTCTAACAATGAAGTACAGCTACAGGTCACTACTCCTACTACTCCAAAAGTCATGGACATCGTTGATGAGGATGAATTGTTATATGGAGAATCATCATTGCCGTTCACATCAGCTGAAGACACTcaacaacagcaacaacaacaacaacaacaaAAACCAAATGACAGTGTTCCTGATTCAGAGTCCAGTGGTAAATCAGTGAAGCCCACATGGTGGTGTGTGGCATGTCGTGACAATGGTGTCCTGGAGATTTACTCTTTACCTGACTTTAAGTTAGTATTCCTGGTTAAAAATTTCAATATGGCTCCAAGAGTGCTGGTGGACAGTGGGTCAGCATCTGCCGCAAGCAGTATGACAGGTAGTGTTGGTCAGGAGGATTCTGTGCCTGTTAAGGAAGTCTTATTAACAGGACTGGGACATCACAACGCCAGACCCATGCTGATTGCATTTGTTGAACAAGATTTGTTGGTTTATGAAGCATTTACCTTCACTGAGGCGTCTGTTGAGAGTCATTTAAATCTCAGATTTAGAAAGCTGCAGCACAATTTACTTCTTCGTGAAAAGAAATCAAAGCAGCAAAAAAGCAAGCAAGCTGATGCTGGCCAAGGAACAAAGCCAAAAGTTGCCAGTCTTCGTGTGTTCAATGACATTTCTTCTTATTCTGGGGTGTTTGTATGCGGCTCTTATCCTCATTGGCTGTTCATGACCAGTAGAGGTGCATTACGAGCTCATCCAATGAACATTGATGGCGCCGTCACTTGTTTTGCTCCTTTTCACAATGTCAACTGTCCTAAAGGCTTTCTTTATTTTAACAAGAAGGGAGAGTTAAGAATTTCCGTTCTGCCAACACATCTGAGTTATGATGCTCCGTGGCCTGTGCGGAAGGTCCCACTCAGATGTACACCTCATTTTGTTGCTTACAACAGAGAGAGCAAGACATATGCAGTTGTTACAAGCTTATCAGAGCAAACTAAGAAAGTTGTGAAGTTAAATACTGAAGATCATGAACCAGAAGATATTGAACGAGATGGAAGATTTGTTTATCCAATCATTGACCGGTTTAGCTTACAGCTTATCTCACCAGTTAGCTGGGAGATCATTCCAAGTACACGTATTGAGATGGAAGATTGGGAACATGTAACCACATGTAAGAACCTTATGCTTTCAAGTCAGGAGACACACACGGGTCATAAGGGCTTTATCTGTGTTGGTACAACTCATGTGTATGGTGAAGACATCACTTGTAGGGGACGAATTTTAATTTTTGATATCATTGAAGTTGTCCCTGAACCTGGCCAACCACTGACCAAGAACAAGTTTAAGATGTTGTATGGTAAGGAACAAAAAGGCCCTGTTAGTGCACTGACTCAAGTTAATGGCTACCTTGTGAGTGCCATAGGACAGAAAATTTACATCTGGAACTTCAAAGATAACAATGATTTAGTGGGAATGGCTTTTATTGACACACAAATGTACATTCACACCTTGACGTCCATCAAGAGTTTAATTATTGCTGCTGATTTGTCCAAGAGTGTAACCCTACTGCGTCTACAGGAAGAAACCAAGACTTTGGCATTTGTTAGCAAGGATCCCAAAGCACTTGAGGTGTATGGAGCTGATTTTCTTATTGATGGTTCCCAACTGGGATTTCTTGTATCAGATGTCGATCAGAACCTACTGCTTCTCACTTATCAGCCAGAAGCTCTTGAAAGTTTTGGTGGCCAACGACTTCTTCAGCGAGCAGATATGAATGTAGGAAGCAACATTGTGTCGTTCTTCAGAATCCGTGCGAGAACCACTGGCAAAGTTGGTGGCAAGGACTTACGACAACTGACTTGTTTTGGCACATTGGATGGAGGGCTTGGACTTCTGTTGCCTATGACAGAGAAAACCTACAGGAGACTACACATGTTGCAAACCAAGCTTGTCGAGTGCATTCCACACATAGCAGGACTCAATCCTAAGTCTTTCAGACTTGTTAGTGGAAAGAAACGTAGCCTGAACAATCCTCATAGGAATATACTGGATGGGGAATTACTGAACAAGTTTGTACAGCTTGGTACAATGGAAAGACTTGAAGTTACAAAGAAAATTGGTACAACACCTGCTCAGATTCTTGATGACTTGATGGATGTTGAAAGAGCTTGCACACATTTCTAA

Transcript

PcrG016303.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03178 all species →	CPSF_A	CPSF A subunit region	Repeat	Interproscan
PF10433 all species →	MMS1_N	Mono-functional DNA-alkylating methyl methanesulfonate N-term	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050358 all species →	Family	RSE1/DDB1/CFT1/CPSF1	Interproscan
IPR004871 all species →	Domain	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	Interproscan
IPR018846 all species →	Domain	Cleavage/polyadenylation specificity factor, A subunit, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10644 all species →	DNA REPAIR/RNA PROCESSING CPSF FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005847 all species →	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14401	CPSF1, CFT1; cleavage and polyadenylation specificity factor subunit 1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.