Gene detail

Detailed information of PcrG016790.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_104:2764687...2767694
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07478 all species →	Dala_Dala_lig_C	D-ala D-ala ligase C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR011095 all species →	Domain	D-alanine--D-alanine ligase, C-terminal	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23132 all species →	D-ALANINE--D-ALANINE LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0008716 all species →	Molecular Function	D-alanine-D-alanine ligase activity	Interproscan
GO:0009252 all species →	Biological Process	peptidoglycan biosynthetic process	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01921	ddl; D-alanine-D-alanine ligase	EC:6.3.2.4	Peptidoglycan biosynthesis and degradation proteins	ko01011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.