Gene detail

Detailed information of PcrG016824.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_106:172673...262351
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG016824.mRNA1

ATGGCGGCCAAAAAGTTTCTGAACAGCCAGGTTCAGTCCATAGTGTTGGCTGCTTTCCTGATTTTCCTGTCATTAGTCCATCTTACTTCATGTAAATCTAGTAATGCTAAATCAATAATCGCTACCTTAGATGCAAGATGGGGGTCTACACCTCTCCTTCTTGAAGCAAGTGAATATTTAGCTGCAGATAGCAATGAAAAATTTTGGAAGTTTGTAGATTCATCTCAAGATAAATCATTCAGTCAAGACTCAGAGGAGTATGAACACATTTTACAAGCTGCGGCACAGTTGTTAGCTCCATTAGGTTTAAATTTCTTGCAATTTTCCTTGTCACTGAGATATTACTCTCCTAGAGTGGAATTATTTAATAAGGTAGCACATGATATTCCAGCACCAGATTGTGAAGCATTTGTTGAAGTTGGTAGTAAGACAGTATGTGATGTCAAAGAAGCAGTCTCTCTTATCAAGCAAGCTCAGAACATACCTTTATTACAAAGTTTTGAATTTGATCACCACTATCCGAAGTCAGAAAACAACTCAGTTGCTGTGGTCCTGTATGGAAGGATAGGATCTCAATCACTCTGGAAATTTCATGAACAACTTGTAAACTTGGCAAATGATGGGAAGGTGCACTATGTTCTCAGGCATTATATACAGTCACCATCTAAAAGAAAAATCAGGCTTTCTGGGTATGGCGTGGAACTTGCTGTAAAGAAAACAGAGTACAAGGCGGTAGATGATAGTAAAATAAAAGACGACACAGAAGGAAAGGTACAGAAAACAGATGAAGCAGACGATGATGAAGTTGAAGGCTTCCTTTTTGGAAAGTTAAGGAAACTTTACCCAGAGCTTAAAGAAAACCTGGAACAGTTTAGAACACACTTGAAAGAAAGTGCACATGAAATGGCTCCTTTAAAAGTTTGGCAGTTACAAGATTTGAGTTTTCAGGCCGCCCAGCGAGTGATGTCCTCTGATCCACAGAGAGCATTAAAAGTGTTGAGGGATATCAGTCAAGATCTTCCCATGCAGACCAGATCTCTAGCTAAGACGAAGGTCAAGGAAGAAATGAGAAAAGAGATTCAGTTGAACCAAAAGCAATTTGCTCAATTTGGACTTGACCCAGGAGACGGCGCATTGATGATAAACGGACTCATGTTTCAAGTAGATGATCTAAATCCTTTCCAACTGTTAGACTTGTTGCGTGATGAAGCACTCGCCATTGACAGACTTTCTTCCCTTGGAATTAAGGGTGAAGCCCTTGGTAAACTCGTGTCTCTTTCTACTCAACCACAACATGAGTCATTTGTTCTGGATGCACGACATGACTCCATTGTGTTTATTAATGATCTTGAAAAGGATCGTCAATATTGGGGATGGCCTTCAGAACTACAAGATATATTACGTCCAACATTTCCAGGAATGATGCGTTATATTGCGAAGAATATTTTCAATCTGGTTTTCTTTGTCAACCCAGTGGATCCCAAAAGCGTTGAACTGCTTAACATTGGCAACGAATTACTACAGAATTCGTTTCCAGTTAGGATTGGGTTGTCGTTGGTTGCCAATGCTCCTTTGAATGGCGAAGTTGATGCCAAGGCTGATGCTGCTGTTGGAATAGCCCGTGCATTCAGCTTCATTTCATCTGAAAAAGACACCCGTCAGGCATTTGATTGGCTAATGAAGCTTTATAACAAGTTGCCTGAAGGTGAAGTACCATCTGCTCAGAACGTCGTGGACTCGTTTACATCTTCATTTGGCAAAGACGATGCGGAAGAGGTTTTTGGTGAAGATTCTGAATATGATGAAGCTCGAAAGTCCTCGCAGCGTTTCTTTGAAAAAACAGGATTCCATGAATTGCCGCAAGTTATCCTTAACGGAGTGCCGATTGATAGTGAAGAGTTCGACAACTTAGATGAAGCTGTTATACGAGAGGTCATGATGCAAACAGGTCCCATTCAACATGCAGTGTTTTCGGGCGCCATTTATCGATACTCCGATGTGTACGAGTACATCATGAGTCAACCGAATGTAGTACCTAGAGTGAATAGCATGATCCAATCCATGGAAAGACCTTACATTGACTTAACTGGCAGTCATCAGATACCAGATGTGGACATAAATGATCCTGAAGCATTCTCCATGCTTGATAGTCCACAGATGACATCCGTGATTGTAAAGGACATGAAATACTTTTCTAAACAAGGAGAAGAGCTTAGTTTAAAGCCCATAACAAACTGGGTTATCGCTGATCTCGCCAACAAAGAAGGAAGGTCCCTCGTTAAGGCCGCTGTCCAACAAATGAAATCATCGTCGAGTACACGAATAGGTCTTATCCACAATCCATCAATAAAAAGGACTGAAGATGAACCCGAGTCTCTTCTGATCGCCAGGACAGTTGAGGCAGTGTTGGCTTCCAAAAGTCACGTGACGCCTGCAATGCTAACATTCTTGGAGAATCTACTTGACGAGAGTAATGACTTTGATAAACTGTCTTCAGATTCCAAGGAAATGGCAGACATGTTGGACAAGTCTACGGGCCTGAAAGCAGAAGCTATTAAAACCAAACTGGCTGATAGCAATGCCTCCAAAGGCAGGCTGTTCTCCCACCAAGCTTTCTGTACACAAGTTGTTAATCTTCAACCCGGACAAGCGGCTGTTATAGCTAATGGAAGGGTATTTGGTCCACTTCTTGGAAGTACTTTGTTCACTGATGATGATTTCAAACTTCTTGAGAACTTTGATATGGACTTGTATGCACGCAAAGTCAGAGATCAGATTGATGAAATGACATTTGAAGGCTTGTCAGCTGATGACGATACAAGTGAATTTAGAAGTGACCTTATCATGAAGGTGTCCTCTGCACTGATCAGTCGGGATAAAAGATCTCGCCAGGAAATAGTTTTTAAAGCTAGTGAACATAGTGTCATGAACATCAAGCCAAACCATGAAGGTGCCAGTTTTGATGTAGTCGCTGTTCTGGATCCTCTGTCACAAGCTGCCCAGAAAATTGCCCCAATACTCATGGTCTTTCAAAATGTGACAAACGTGAACATCAAACTCGCAATGAACTCTCGTGAAAAGCTGTCCGAGTTGCCTTTGAATCGTTTCTACCGATACGTCCTGGAGCCTGAAGTCACCTTTGACGAGGATGGAACAATGGCTGAGGGACCGTCCGCCTTGTTCTTGGACATGCCGCAGTCTGTGCTTCTGACCATGAACATGGACACTCCACTCGGGTGGATGGTGGAGGCAGTGTACTCCCCGCATGATTTAGACAATATCAAATTACAGGAGGTGGAGAATCAAGTGATAGGAAAATTCGAGTTGGAGTATATCTTTATTGAAGGCCATTGCTCCGACTTTCACACCAGACAGCCACCAAGAGGACTCCAGTTTACCCTCGGTACTCCGAGGAACCCTGTCATGTTTGATACAATTGTCATGGCGAATTTGGGCTATTTCCAGCTCAAGGCTTACCCTGGAGCTTGGTCGCTGAGAGTGAGAGAAGGCAGATCGTCTGAAATTTACGAGATTGAAAGTGTTTCTGGAAGCGTAAAGGAAGATGATGGTCATTTTACAGTCGTTGTCGACAGTTTTATTGGAAAGCTTATGAAAGTAAAGGTTAAAAGAAAGCCTGGCATGGAAGGAAAAGATCTCCTTAGTGAATCGGACAGTAAGTCCTCAGGTGGCATCTGGGACTCACTCTCAAGCTTTCTTCATTCTTATCTACCTAGCATTGTTGGAAGCGAAACAAAAGAAGACATCCCTAAAGATGAAACCATCAACGTTTTCTCACTTGCATCTGGTCATCTCTATGAACGTTTCTTGAGAATAATGATGTTAACTGTTATGAAGCATACAAAAAATCCTGTGAAGTTTTGGTTCCTTAAGAATTACCTCTCACCAACTATAAAGGCCTTCCTACCTCATATGGCCAAAGAGTACGGTTTTGAGTATGAACTTGTGCAATACCACTGGCCCCACTGGTTACACGCACAAACAGAGAAGCAGAGGGTGATCTGGGGGTACAAAATTTTGTTTTTGGATGTTCTGTTCCCTCTCCATGTGAAGAAAATCATTTTCGTTGATGCAGATTTAATTGTAAGAGCGGACTTAAAGGAGCTCAATGATATGGACTTGTACGGAGCTCCTTATGCATACACACCATTCTGCGACAGTCGCAAAGAAATGGATGGTTTTAGATTTTGGAATGTTGGTTACTGGAAAAGTCACTTAGGAGGAAGACCATATCACATCAGTGCACTTTATGTCGTGGACTTAGATCGGTTTAGAAGACTTGCAGCTGGTGACAGGTTAAGAGGACAGTATCAGGGCTTGAGTCAAGATCCAAACAGTCTGTCCAATCTTGATCAGGACCTGCCCAACAACATGATCCATCAAGTGCCTATCAGGTCCCTGCCTCAGGAGTGGCTATGGTGTGAAACGTGGTGTGATGATGAATCAAAGAGCAGAGCTAAAGCTATTGACTTGTGTAACAATCCCATGACAAAAGAACCTAAACTACAAAGTGCTGTAAGGATAGTGAAAGAGTGGACTGACGTAGACAATGAAGTAAGAAGACTACAAGAAAAGATTTCAGCGCAAACGGCTTCCTCAAAATCTGATCCAGCTAAATCAAGTGATTCTCCAATGAAAGCGAAGGAAGAGCTGTAG

Transcript

PcrG016824.mRNA1

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003077 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06427 all species →	UDP-g_GGTase	UDP-glucose:Glycoprotein Glucosyltransferase	Domain	Interproscan
PF18401 all species →	Thioredoxin_13	Thioredoxin-like domain	Domain	Interproscan
PF18404 all species →	Glyco_transf_24	Glucosyltransferase 24	Domain	Interproscan
PF18403 all species →	Thioredoxin_15	Thioredoxin-like domain	Domain	Interproscan
PF18402 all species →	Thioredoxin_14	Thioredoxin-like domain	Domain	Interproscan
PF18400 all species →	Thioredoxin_12	Thioredoxin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR009448 all species →	Family	UDP-glucose:Glycoprotein Glucosyltransferase	Interproscan
IPR040694 all species →	Domain	UGGT, thioredoxin-like domain 2	Interproscan
IPR040497 all species →	Domain	Glucosyltransferase 24, catalytic domain	Interproscan
IPR040525 all species →	Domain	UDP-glucose:glycoprotein glucosyltransferase, thioredoxin-like domain 4	Interproscan
IPR040692 all species →	Domain	UGGT, thioredoxin-like domain 3	Interproscan
IPR040693 all species →	Domain	UGGT, thioredoxin-like domain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11226 all species →	UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003980 all species →	Molecular Function	UDP-glucose:glycoprotein glucosyltransferase activity	Interproscan
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0018279 all species →	Biological Process	protein N-linked glycosylation via asparagine	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0071712 all species →	Biological Process	obsolete ER-associated misfolded protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11718	HUGT; UDP-glucose:glycoprotein glucosyltransferase	EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.