Gene detail

Detailed information of PcrG016893.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_108:943685...956388
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG016893.mRNA1

ATGATTGGATGGAAAAACACAAGAAACGCTTTAGGAAAGCTCGAGGAATTGTTAACGTGCAAAGTTTGTTCAAATCTGGTGTCTGATCCTTGTTCGCTTCAAGCTTGTGATCACATCTTCTGTCGGAACTGTGTTGAGAAGTTGGTTGGAACTGATTCTAAATGTCCAGAATGTGGGGCCTTCGCGTGGGTGAAAGACATGAAAACCAATCGTCAGCTGGCTAACACTGTCAGCATGTGTACCAGGATGAGAATGCTTGTTGGATCAggtgatgatgacaataatgaagaatttgatgatcgcaatggtgatgatgatggtggtgaggatAAAACGCATACAGACAATATAACAGAAGCAGCAGTAGTATGGGAAGAGACACAGCCCACATTTGATCAAGAAATGGACTCCTATCAGTTTTCTTCTCCAGATGTTGTCTTAGCTGCCACATCAATGAATAAGTGTGATGCCGCAGTACAAGATATAGCACGGAATAACAAGAAAAAACCTACGGAACCTGTTAAGATTAAGACTTATAGCCGAGGACAGATGAAAATAGCAAAAAAGTCAACAAAGGCCAAGCAAATTGGTGCAGATCGAGCTGATAAGGGTAACAGGAACAGTGATACTGAACAAATGAAACATGATGGTGGAAAAGTTTTAATATGTCAGAGTGGGATTCTGTCAAGTAGGCAAGATGATATCAAAGAGAATATGTCGAAAGAGGCTTCAAAATTTTCAAGCAGTCCACGCGTAGCCAAGAGAATGCAAGCCAAACAGAAGTGTTTTGGAAAGCCATTGAAGGAGAAGAAATTCAAAAAGACAGTTTCTTCTCCTGATTTTGAGAACAAAGGCCTGGATGATGCCCAACTGACTGAGAAAGCTGACATTTTACAGTTTGGATCTAATGGAAGCAGTGATACAGACAAAGTTAAAGAGAGTGTTGAAGAAAAGTCTTTTACGAGGCTGAGATCAAGGAACTCAGGTACATGTATGTCTGGGACCTTGACTGCGTTGTTCAGTAAGGGACTTTCACAGGAACAGACACCTAAGACAGTAAAAAGTGCTCCAAAGACTAGAGCTCAGAAGAGGTCCTCAGAAGAATCCATACCACAGAATGAGCCAGATATACCCAAAGATCTTGTaaaaatgaacaatgaaaagggaaacaagaagaagaagaacatgaCGGACAGCAAAGAAACTCCTGTTAAGCCACAAGGGAGTAACAAAAGAAAGATGTCAGAGCAGCATTTTCACAGCCCAAAGAATACCACTTTGTGTTCTCCTGGTGTGAAGAAAAACAAGCGTGGAGAGACGCCATTACATGTGGCTGCAATCAAAGGTTGTGTAGAAACTGTCAGAAAGCTGCTTGTTGAAGGAGCTGATCCTAACACTAAAGACCATGCTGGCTGGACACCACTGCATGAAGCTTGTAACCATGGTTACCTGACCATAACTGAACTGTTATTAGACCACGGTGCGTTGATTGATGTTCCTGGTGGGTTTGACCATGACACACCGCTGCATGATGCCGTCACCAATGGAAGACTGGATGTAGCTAGACTGTTGGTCTCCAAAGGAGCTCCTCTTAATGTCAGAAACAAACAAGGACTCCTTCCAATCGATTATGCAACAACTGAGGAAATGTTAGCCATCTTATCCACACCAACTCCAAACAAAGACGATGAATCATCAGCAATGGTCTCATCACTTTTGAATGAAAAGGGCTCACAAGATTTGCCAAAAGTTCTGCTGGCAACTGGTCTAAATTCTGAACAAAAGGCAAATCTGCAAAAATGTGCAAGAATTCTCAATGCAAGCATTGTCAATGAATTTTCCCTCTCTGTTACCCATATTGTGACAGCAACGAACAACAGAAAAGGTGTTTGTCCAAGGACTATAAAGTATTTGAATGGTGTGCTTACTGGAAAATGGATAGTGAGCTATGAGTGGATACAAAAATGTCTGCGACACAAAACCTGGGTAGACGAAGCACCACATGAGGTGAAGGGTACAAATGACGCTGTGGTGGACACTCCTAGACGAGCTCGCATTAATTCACTTAAACAGCTTCCTGGTTTGTTTGATGGTTGTCAGTTTTACTTTAGTGGTGAATTCCACCCGCCCCACCCTTCAAAGGAAGACCTCATTCAGATGGTCAAGTTCGGTGGCGGCAAAATCCTTTCCCGTGAACCAAAACCGGATGTTGACGAGTCTCTATGTTTACCAACAACCCGTGATTCTAACAAGACACCTAACCATGCTGCTACTTTAGCTCCTGTGGCTTATCATGCAAATCCCAGCTCTAAACAGTACCGATGCACACGGTACATCATTTACGATTTGCTGGCTGAAAAGAATTCTCACATCTGGAAAACTGATTCCGTTTGTAGCATGCCCTCAACCTGGCTTATGAACTGTGCTTCTAACTTTGCAATTGTAGATTTAGAATAA

Transcript

PcrG016893.mRNA1

GGAATTTCATAAAAGCCAAGTCGAGCTTTGATTTGTTTTGCTTCGGGTTTTTGTCAAAGTTTTTGGCTTTCTTTTAACTTAAATTGGAAACTGTGAGAATGATTGGATGGAAAAACACAAGAAACGCTTTAGGAAAGCTCGAGGAATTGTTAACGTGCAAAGTTTGTTCAAATCTGGTGTCTGATCCTTGTTCGCTTCAAGCTTGTGATCACATCTTCTGTCGGAACTGTGTTGAGAAGTTGGTTGGAACTGATTCTAAATGTCCAGAATGTGGGGCCTTCGCGTGGGTGAAAGACATGAAAACCAATCGTCAGCTGGCTAACACTGTCAGCATGTGTACCAGGATGAGAATGCTTGTTGGATCAggtgatgatgacaataatgaagaatttgatgatcgcaatggtgatgatgatggtggtgaggatAAAACGCATACAGACAATATAACAGAAGCAGCAGTAGTATGGGAAGAGACACAGCCCACATTTGATCAAGAAATGGACTCCTATCAGTTTTCTTCTCCAGATGTTGTCTTAGCTGCCACATCAATGAATAAGTGTGATGCCGCAGTACAAGATATAGCACGGAATAACAAGAAAAAACCTACGGAACCTGTTAAGATTAAGACTTATAGCCGAGGACAGATGAAAATAGCAAAAAAGTCAACAAAGGCCAAGCAAATTGGTGCAGATCGAGCTGATAAGGGTAACAGGAACAGTGATACTGAACAAATGAAACATGATGGTGGAAAAGTTTTAATATGTCAGAGTGGGATTCTGTCAAGTAGGCAAGATGATATCAAAGAGAATATGTCGAAAGAGGCTTCAAAATTTTCAAGCAGTCCACGCGTAGCCAAGAGAATGCAAGCCAAACAGAAGTGTTTTGGAAAGCCATTGAAGGAGAAGAAATTCAAAAAGACAGTTTCTTCTCCTGATTTTGAGAACAAAGGCCTGGATGATGCCCAACTGACTGAGAAAGCTGACATTTTACAGTTTGGATCTAATGGAAGCAGTGATACAGACAAAGTTAAAGAGAGTGTTGAAGAAAAGTCTTTTACGAGGCTGAGATCAAGGAACTCAGGTACATGTATGTCTGGGACCTTGACTGCGTTGTTCAGTAAGGGACTTTCACAGGAACAGACACCTAAGACAGTAAAAAGTGCTCCAAAGACTAGAGCTCAGAAGAGGTCCTCAGAAGAATCCATACCACAGAATGAGCCAGATATACCCAAAGATCTTGTaaaaatgaacaatgaaaagggaaacaagaagaagaagaacatgaCGGACAGCAAAGAAACTCCTGTTAAGCCACAAGGGAGTAACAAAAGAAAGATGTCAGAGCAGCATTTTCACAGCCCAAAGAATACCACTTTGTGTTCTCCTGGTGTGAAGAAAAACAAGCGTGGAGAGACGCCATTACATGTGGCTGCAATCAAAGGTTGTGTAGAAACTGTCAGAAAGCTGCTTGTTGAAGGAGCTGATCCTAACACTAAAGACCATGCTGGCTGGACACCACTGCATGAAGCTTGTAACCATGGTTACCTGACCATAACTGAACTGTTATTAGACCACGGTGCGTTGATTGATGTTCCTGGTGGGTTTGACCATGACACACCGCTGCATGATGCCGTCACCAATGGAAGACTGGATGTAGCTAGACTGTTGGTCTCCAAAGGAGCTCCTCTTAATGTCAGAAACAAACAAGGACTCCTTCCAATCGATTATGCAACAACTGAGGAAATGTTAGCCATCTTATCCACACCAACTCCAAACAAAGACGATGAATCATCAGCAATGGTCTCATCACTTTTGAATGAAAAGGGCTCACAAGATTTGCCAAAAGTTCTGCTGGCAACTGGTCTAAATTCTGAACAAAAGGCAAATCTGCAAAAATGTGCAAGAATTCTCAATGCAAGCATTGTCAATGAATTTTCCCTCTCTGTTACCCATATTGTGACAGCAACGAACAACAGAAAAGGTGTTTGTCCAAGGACTATAAAGTATTTGAATGGTGTGCTTACTGGAAAATGGATAGTGAGCTATGAGTGGATACAAAAATGTCTGCGACACAAAACCTGGGTAGACGAAGCACCACATGAGGTGAAGGGTACAAATGACGCTGTGGTGGACACTCCTAGACGAGCTCGCATTAATTCACTTAAACAGCTTCCTGGTTTGTTTGATGGTTGTCAGTTTTACTTTAGTGGTGAATTCCACCCGCCCCACCCTTCAAAGGAAGACCTCATTCAGATGGTCAAGTTCGGTGGCGGCAAAATCCTTTCCCGTGAACCAAAACCGGATGTTGACGAGTCTCTATGTTTACCAACAACCCGTGATTCTAACAAGACACCTAACCATGCTGCTACTTTAGCTCCTGTGGCTTATCATGCAAATCCCAGCTCTAAACAGTACCGATGCACACGGTACATCATTTACGATTTGCTGGCTGAAAAGAATTCTCACATCTGGAAAACTGATTCCGTTTGTAGCATGCCCTCAACCTGGCTTATGAACTGTGCTTCTAACTTTGCAATTGTAGATTTAGAATAAGACAGTACCTCTTGTAAAGCACTTTCAACTGTCTCCATGATGGACTCTGTGACCAGAAACCAAAATATCAAACTGACAATTTTTGATTACAAGGGTTTTTACGCATGTTTGGAAATAAGTTGGTTCATcagggttgccacggtcagggaaaagtcaggggaaaacaaaaatttttcaaggtcagggataagacagggaaatttgtaaaaggtcagggaaaaatcttacaagtttgtaaaagtcactgaaaagtcagcaaattatattttcagccagaaaagcatcatgaaaaatgattgatttgagtgaaatttgtaggaatagtagttttgctcagtggttttcagtgtttaaaatcattcacatagctaatttaaggtcagtgttgtccagaagtcagtgaaaagtcagggaattcttcatcttctggtgagtggcaaccctgTTCACAATACAGAACCAGTATGTAACTTGTACTGCGCATTATGTTAGACTTCACTGAATACAGACCAGGGCTGGCGGACAGTTATTTTGGAACCTTGCGAGGGTGCATGCCTGGGAAAAGTTTAACTACATAAATTTGTCATTTTCTGAAACCACATTTGTTGTAGCGTTCAACACATTTTGACCGCCCATAAGATGGTTGCCTCAAGAAGACACTACTATCAAATGCCATGTTTTAGAAAAGTTACTATTTCTTAGTTGCAGTTTAATTATGTAAGTAGAGCGAGGCCAATTACAGGTGTCTGTTTTAGAGGTGTCCATAAAATTTACACTATAGAATCAATTATAAAATGAATAAAAATATTTTATAGTCTTACATGTATCTCTGTTAAATTCCACTCATACAATAAAGGGGAAAAGCAACAGGTTTCAAGTAGGCATAACGTTTCATCAATAGTCCTTTTTAAAAATTCCACTTTTAATGTCCTTCTCATCTTATTTATTTGACAATGCAATTTTATAATAGAACTAATTTTCAAAACAAAAACAGATGAAGGATTTAGTTCACAAGAACTGTTCTCACAGGCCCAATTGTATCATTTGCATGTTTTATTCTGTCTCACACAAGAACAGCGGGATGTAGGTGCTGGCTGAGAGAAATACATGGTGCAGGTTGGGTAGTCACACAGTGTATTTagggctgtcagtaaggacggtccaccaacctaaaagttgtcgcctactttgctcttttgaccttttttacccaaaatagtaatgcaagtcagagaaattttgtttaaaGAGCCAGCTGTCACCCATATTTTGCATAATACTTTTATATGAAAAATTTACTATTACCCGGTATCTGTCACTTGGTACAATACAATACACCTCTCCAACACATTTCATCCTATGCCAAGTTTAATTGAATATCATCAAATTCTAGTGTACAACATATGTTATTGCACAAAAGGGCTGTTCTCTGCCTATGATGGTTTCTTCCTCCACAAAAAGGCAACAGGACAACTGCAATTCATGTTTTTTATTCATTAAAAAACAGCATTGATTATGGCTACTATTAAATAGAAAACAGCATTTTTATCTACTTTTTTTGCACCAGAAAAATGTTCCTGAAAACTCGACAAAGGTTGGTGATTGACTCAGCCCTTCAGTTATCAACTTAAAACAAATCTCATTCTTATTTCATGGGGAACATCTATAAAAATCACTATCAGACAGTATTAAAAGTATTAAAATAACATACACTGTCTAATAACTGCAATACTTGGTATTGTGAAAAATACATTGATTTAATTTCTTGCCGATCAAGACTTGTCATTCCAATAAGTGTCATGTGATCAATATTATGTTATTGATTAggaaaccaccaatctgcgaaatgcattcaaatttttacatccttgcccgcccatttttgtcaaccaatgtcatcaaattccACAGTGATGTGAAAAATTGAATCCTTTCTGTGGATCGGTGGCTTTAGTAATAACCTTACTAGATGAAGAAACAGTGAGCACAACACTCAACAAGATCATTTCTGACCTTGCTGCAATTCAATAGCTGttattggagttctcagcggtttgacattcaaacgaggctaaaggatcaatctgcattgtgtttacctttgtattgacccttttacctagctcgcatacattctttacaaaagaatattaatattatcgcagggtcaactgcgataacagctATTTATGTTGCATAGCTTACTCTTCAATATAAACAACTTGCTGTAGGTATGAAGCAATTATAAAAGCTGCAAAGTAACTTATGTGGAAAATACCATCCCTTGCTGCTTAGCCACTTAACTACATGTTATGAATAATATTATCAAGATACAAAAAACATGTTTCTATAACATCTGAAAATACATTAGTTACATAATTATTAGTAAATATTGACATCAGAACAATAAAACGCATACTAACCAATTACATTGGTCATGATCATTTAATGCCAAAAGTTTTAATGAATTGCAGCAACTTAACACTACGCTAAAATATGTTCATGGGATGGGAGGGGGGGGGGGCTGCTTTACTAGAGGGATACCCTGCAAGGCTTTCAAAACGATTTCATTCTGATGCTTAAAGAATTGATTCTGACGATGAAAACATTCTGATGCTTTAAGAATTGATCATCTTTTTGTGAACACAAAATTAATTCTAACAATTTAAATTTTTTTTTTCCACTGACTAGTAAGATGCCTAGTAACTGGGGGAGTAACATTATTGAGGGGGGAATTAATCTGAAATTGAATGCGATcaccagtagatagttgacccccaccgaaagcaccccaggttggtagaggactgtttgggtgtccatccactaattatttttaacttcaaatcttaatttaaaactacattaaatcttcaaaatttctcctaattttaccaatcctttgagaaaaactatctcctcccaaatatatacccaaaattcacccaaaaaaattctaaaacaccccaaaacattaatagtgggatgagcatagagtttttgtattgctggtcaacgtgaatgaaatatttctatcaaacccatatttaAGGTAAAATCCCACCTTAAACTGAACTTAGTTTGTGGCCATAAAACTGAAAGCAACAAACTGAAAAGGGAAGCTTAAGCTGCAAGAAAAGGACAAACTGACTTTTGGGGTGGTTttaagggcattcacattaattcaatatttctgtgcatccatactgcacacataattcatattgcaatgttatgccacatcaggcattgagcacgtacactgagaaaactttctgaacacagcagtttacactcttagatgcttggtgccccctacttttattcTTTATTGTATTACTTTTGTGAACGATCTATGTTTCACGCGAAAATAATAAAAAAAAAAACCATGGACTTAAAGTTTGAATCTTTTGGTCCATTTGAATTCTTTTTTTTGTGCTTTTCATTTTGCTGTACGACCGTTTCTATTGCCTTTTTCAGGGTCATTAGTCTCACGAAAAGAGAAGCAACTCTAATATTAATTTACACAACAAACATACTTTTACAAATATTACTAAAATCGTTTGCCTCCATTGACTCGTCTTCGATATTTTTAATATAACCCACACCCTTTGTTAAgaaacgaagtcagtggccccagctttttttgcatttctgacataaatgactcattatgtgactgcagtaaaagtttttcaaaaaatctaacgactacaaaatttttgcacgaacgtccttaaCCTCGGATAGTCTTTCAAGGACAAAGGCCATTATGTCCTTGTTTACGCTATGTTAAACTAATGTTTAGGATGCTGTTTTCAAAGTTTCACACCACTTAGTCTGAGTGAAATTTACCATGTACACTGACAACAATTGTAAAACTATAATGAGAGATCGAGATCTACCCATAAAACCCAGCATAAAAACAGTTAAAATTAATTTTCTTATAAAAATGAAGCTAAACAGTATCAAATACAAATTTACATCTTAACAGACTTACAGTAGCCACATTTTGTTGATTACAGTCCTATTTTCTAGCACAGAAAAAGTCTTGCTTATACACAAgggggtgtcaactcttagaagggctgtttcgggagaaaaacaaacttcttcaaggaatctgaagattttgccaggaagagacttttccgggagacacgatgtaatgaagttaacatttatagaggcttgaaattttttaggaatatctcccaaaaatttgggacaatattccagattttttggaggacttttatttacacatggttctgctcaaacagcatttgtgagagctgtcactcccccattatACACTTCACTGGCACTTTAAAATAATGTCTAACCAATATGGACTTTCAAGTTGATTCACGTTTACAATACTAAAAAAGCAAAGTTAAGATTTTCTCTAAAAATGATGCGGGCTTGCATGCTTAAACTAAAGCCACAATTATTATTTAAGTTAAAAAAATCTTCAACTAACTTAGGGTCAACTTTACAttattgcagttttcagaaacatgcgaactccgccaagtcaacggctactacgaaatgtgtttttcacttccgtcaatcataattatggcaacagcaaatgaaacttgaaaaacagaaacaaacaaaatggatcaaaatctaccaatcacagctgagaagcgtgaccttttgacccagttaaaacaaactgatgtttcctgagaggtccgcttatatgataaacggcagtgaaaaacgtatttcatagtagcctttgacttta

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF14835 all species →	zf-RING_6	zf-RING of BARD1-type protein	Domain	Interproscan
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR039503 all species →	Domain	BARD1, Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24171 all species →	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0031436 all species →	Cellular Component	BRCA1-BARD1 complex	Interproscan
GO:0070531 all species →	Cellular Component	BRCA1-A complex	Interproscan
GO:0085020 all species →	Biological Process	protein K6-linked ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10683	BARD1; BRCA1-associated RING domain protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.