Gene detail

Detailed information of PcrG017076.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_110:2771595...2779762
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG017076.mRNA1

ATGTTAGGGATGGTAAAAGGATGTTTAAGAAAAATAAGTACTCACAGGTTTTCTTTAACAGAAAATGTCGTTCGCCCAGCAAGTTCCTCAGATAAGGTCCTTGATATACAAAAAGTTGAGCCATCAAATATGTCATTCGACGTACCAGGAAAAAGATCTCCGCACCCCGTTCAAAACAATGTTTTAATGGAGAAAATCGGCGACACAGACAAATCAATTACATCAAGAGCTCCATCGAAATCTTCAAGCAAAGCAACCATAGAAAAGGACATGACACCAGTTGAAAAAATCCTGCCCACAACAACAAAGCCTTTGACTCAAGAGGTGATCAATAGAATTTCAGAAGACATTGATGTCCGTTTTGAAGTGTTACGGGGTAGTCAAACAGCAGAAATTACTTTACGGAATAAGGGCTCGCTGCCAATTGAAAGAGGTCAATGGTCTGTACACTTTTGTATCACGACCGGTATAGAACTTGGTAATCTGGATCACAGACTACAAGGGTATGTACTACTAGGTAAAAAATCAATCAAACTCACTCATTTGAATGGATGTGCTTATAAGCTAGAGCCCACCAGAGACTTCAAGTCCATCTTGCCTGGAAACTCTCTGAAATTCATGGCCCGTATCCGTCCAACATTGGCACGGAGTGACCTGGCGCCGAGATGGTACGTCAGTGCTGTTGGTCTTGAGCCAAAGATCATTGCCAACACTGCGGATGAGAGCCTGGACTTTGTGTTCCTTTCAAACAGGAGGACACCCTGGGATAGATCTAGATTTGCAAACAATGATGTGTCCGATCTTGGGAAAGCACCTTTGCTGGTGATACCGACTCCTTTGGAAATTGACGGGTTGAATGAGTCTAAGAAACTAGTCATTGATAGTGAGTGGGTTTTGTGTGGAGAACCGGGATTGGAAAAAGAGGCAAGCTTTCTTGCAGGTAAGCTGCAACTGCAAAAGTCTCTTTCTCAAACAACGGACAGAAATGTCATCAAGCTCGAACTATATAAGGTATCATTGGCAATGCCAGGAGGTAGCCAAAAGCTGTTGCCTGATCGATCATCCAGTGAGTCGTACCAGCTTCATGTGAATCCCTCTAAACAACTAATCACAATCACAGGAACAGGGAGTGCTGGGGTGTTCTATGGTGTCCAGACTCTACTCGCTCTTATCGACAACCAAGGCATGGTTCCACAGGTGTCAATCAAGGACTCCCCTCGGTTCTCGTATCGTGGGTTGATGGTGGACGTTGTTCGTAATTTTAAGCCAAGGCATGAAATTCTGAAACTTTTGGATGTCATGGCTATGTATAAAATGAACAAGTTTCACTTTCATCTATCGGATAACGAAGGATGGCGATTAGAAATACCAGGAATAGAGGAATTGACCTCGGTTGGGTCCAGGAGATGCCATGACGTAAAAGAAAAAACATGCATCATGCCTCAACTCGGTTCAGGTCCCTACACCAACACCTCGGGCACTGGGTACTACTCTACTGCAGACTACAGAGAAATACTCCGTCACGCAACAGCACGTCACATTCAAGTGATTCCAGAGTTCGACTTTCCAGGTCACAGTCACGCTGCTATTAAAAGCATGATAGCTCGCCATGACAGACTGATGCAACAAGGTAACGAGGAAGGTGCTAAACACTTTCTTCTAAATGACTTCAAGGATGAATCACGGACTGTCCAAAAGTTTCCCCATGCAACTGCCAGTTGCTGTTTGAACTCCACGTATACGTTAATAGAGTTTGTTTTGAAAACGCTGGTAGACCTGCACCGCGACATTCAACCGCTGACCGTTTATCACTTTGGCGGAGACGAAGTTCCGAGGGGAGCCTGGTTAAAATCGCCAGCGTGTGAACAGCTGGCCAGGACGTTAAAAATTCCCTATAACAATACTAGTACACAAGGAAAACTGAAAGAGTACTTCTTGCAGCGTTTTACAAACATCACAGCAAAAATGAACCTAGCTATCGGTGGGTGGGGAGATTTTTTGTTCGAGCCTAAAACACGGTCTCTCTTTTCGAGGAAGTTTTTTCCAAATAAGGAGGTGTACTCATTTTCATGGAGCGTCACTGGAGTTGCGAAAAATAATAACGAGGTATCTTTGATGGCTAACCACGGATATAAGGTTGTACTATCAAGCCCAGACTTCTTCTATTTTGACCACCCGTATGAACCTCAATCGGAAGAACGCGGAAAGTATTGGGCCACAAGTTATACGGACACACGAAAGATATTCAGCTTTATGCCTGAAGATCTCTATCAGGATATTGACCAGATACGAAACTTCTCTGGCTTGAAGAAGAGTGCGGGCGCACGGCAGAATGTCCTGGGTGTTGAAGCAGCAGTCTGGGGCGAGACTATAAGAACCCCTGACCAAATGTACGCCATGATCTTTCCTCGCCTTCTTGCCCTAGCAGAACGCGCTTGGCACAAAGCATCCTGGGAGAACATTAAGGACATGCGTGCGCGAGATCGCGAGAAGACTAGTGACTGGGTTAATTTTGCCAACACACTGGGTTACAAGATGCTGGCTCGGCTTGACAAGATGGGCGTGCCCTATCATCTGACACCGCCTGGAGCAAGGTTTGTAGGTAAGAGACTGGAAGCCAGAGCTATTCTGCCTGGCCTTAAAGTTGAATACTCGACTGATGGTGGAGCAACATGGAATGACGTCACGAGTAACGTAGAGATTGACGGGAAGATAAAGTTAAGAACTAGATCTGCCGATGGTCAACGTGTTAGCAGAGAGGTTGAGATTGAATCACGGAAATCAGCCGTAGTGGGAAACAAAAACAACGCCAAGATTGTGTTTGATACTCAGGCTAAGAGAAAACCTGAGCAACAAAACCAAGAGGATGATGATGAAAAAGAGACAAAAGAAAATACAAGCCTCATCAAAAtaccgtatttacgcaattaa

Transcript

PcrG017076.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00728 all species →	Glyco_hydro_20	Glycosyl hydrolase family 20, catalytic domain	Domain	Interproscan
PF03174 all species →	CHB_HEX_C	Chitobiase/beta-hexosaminidase C-terminal domain	Domain	Interproscan
PF03173 all species →	CHB_HEX	Putative carbohydrate binding domain	Domain	Interproscan
PF02838 all species →	Glyco_hydro_20b	Glycosyl hydrolase family 20, domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015883 all species →	Domain	Glycoside hydrolase family 20, catalytic domain	Interproscan
IPR025705 all species →	Family	Beta-hexosaminidase	Interproscan
IPR004867 all species →	Domain	Chitobiase C-terminal domain	Interproscan
IPR008965 all species →	Homologous_superfamily	CBM2/CBM3, carbohydrate-binding domain superfamily	Interproscan
IPR029018 all species →	Homologous_superfamily	Beta-hexosaminidase-like, domain 2	Interproscan
IPR004866 all species →	Domain	Chitobiase/beta-hexosaminidases, N-terminal domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015882 all species →	Domain	Beta-hexosaminidase, bacterial type, N-terminal	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR012291 all species →	Homologous_superfamily	CBM2, carbohydrate-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22600 all species →	BETA-HEXOSAMINIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004563 all species →	Molecular Function	beta-N-acetylhexosaminidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030203 all species →	Biological Process	glycosaminoglycan metabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0030247 all species →	Molecular Function	polysaccharide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG017076.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.