Gene detail

Detailed information of PcrG017263.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_112:1574641...1586165
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG017263.mRNA1

GCTTGCTGTGCAGTATTCGAAAGCGAGACACGTAAGCTCAACTTTCACAAGCATGTATTGTATCTTGCATTTTGCTTCAAAATAGTGAATCTTTCGGCTTTCGCAGTTATTTTGTTCCGGAAACGGCTTTTGTTCTCTGCTGGTGGAGCCTCACTTACATGTAGTTCGCCATGTTGATGTCACATGGGACCAGCTAGGCGGCCGTGATGGCCGCTCTTGTACCGAATGAAACGAAACAGTTTTAGAGCCGTGTTCGAGAGAACGTGGTCAAAAATCTCCCAAATGGTTATGACTACGGATCTGCCGTGCACCGGAAACATGGATCAGAATCAATTCAAACCCGATGCGCCTTTTGTCGGAAATAAATCGCCGCCGAACGCTGGGAGCTCGCGAGCTGAACGACAACAGTTTACGCGCGTTTTGCGATCAAAATCTTCCACTGCTGTGAAGAATAGCAACAGCAACACCGAGATACAGAAGGAAAAGCCTCAGCCAAACGTTAGCAGTCCGTTATCGAAGTCGACGGAGCCAGAAATTGCTCATGATGGTAGCAATCATAAAACGGATGCTCTCGGGCAAGTGACACACTTACGTCAGCTTTTGTTACTGCATTTGGAGCTTATTCAGCAACAACAAGAAGAGCTACAGAAAAAAGATCGCGAGATTAATCAGCTAAGATTAGACAAGGAACAGCTGGAATCTCGAATGCACCGATTAGAGAGAAGAATGGCTGTAAAGAGAAGGAGAGATGTGAATGAAGGTTATGATGGAGTTTTCGAAGAAAAAGAAGTAAAACCAGTGACACCTAAAAATCGTCGTCTGTCAGTAGAGCAAATGATGAGAGCCAAAAGAGTTCCAGCGACTTCTTCTGTGACCATGACATCGCACATGTGTGAAGATGTAAGCTTCGACACTCACATACGAACAGAGAAGCTTTATCTGCATGGAGACTTGCCTGATCTTTTGAATAAACCTGTTGAACGTTTGACTGTTGATAATGCCCAAGGGCATGTGCAAGTTCCCACTTGGCAAATAAGTGAAATAGCTGCAGCTGCTAAGCCAGCAACTTCAAAGTCAGTTAAAACATCAGGTGCTTCCTCCTGCCTTGAGAATACTGAGATTATTGATGACGAAGTATTTGCTAAACGGCACATGAAACAGGAACTGGAAGAGAAAAGAAGGAAACGGTGGGACATACAACACATGCGTGCTATTCAGGCACATCAAAGTCTTGAAAAGAAACACAGAGATCGAGAGGAAGCAAGATTGAGAGGGAAAAAATCTGGATGTACAGAACAGGAATCAAAAGACATAGAATCCTTTCTTCCACCTCCTGAAGATGTAATGGCAGTGGAAGTTTCCGATACAGTCCCAGTAGTAGCCTTTGGATTTCCTGTTCCACTCTTTCAAGACAGGGAATTTGACATCCCTTGGTTTAGTCTTGATAAGAGAGAACTCATCGAAAGAAAAGGAAAAGTTAAGCCTTGGAGAGGTCGAGGGAAATCCCGTGGCAGACGAAAGGCTTATTAGAAAGGGAGCACATTTTTTGCTTGACACTAGAATCCTGGCTAAACAATGGACAGACAGAATTTTAATTTTTTTTTTTTTGATATTTGTGAAGTGTAGCTTGCTAATAAGGAATTAATTTACAGAAGTGATAACGTTTTTTTAATTTTTAAATGCAAATTTTACACCACTTAGCCAAGAAGATATGTCAAGTTTTAAATTTAACTGCTAGAATGCCAACTTCTCAAAGGTCTGTTCATTCAACACTGGATTTTTGCTATGGCTCATTTGAAATAAGTTTATTTGTCTGAGGTGAAAATTTTGTCTATGTCATCAAAACCCTCCTCGTTGTAAATGGACCTGTTTTTTAGCCTTTGTGAATATGCGTGGATGTTACTGTTAATTGCACAAAAATTCATGCAATTTCTGATGTCTACCTACGTTAAACAGGCTAGTTAACCTTAAAGGCCTTGATATTATGCACAAGTTCTCACAGACTGTCCTGTATTTGTTGAAGTGACACACAAGATTTCCAGAATTTTCAGCAGCAATTTCGTACGTTAATATATGATTTTGTACATTCTTGTAACCTGCGAAAGGACTCCATAGTAATATTCTGAAGTAAAAATTGTGTTTGATCACTCAAGGCTTGAAGGGTTAAGGAAATAAAATAATGTTGCGTTGTGTTACCAAAGTTGTGCACTTGTGAAGTTAATGCTCAGGTGTTAATTTTTTTGGGGGAGGTAGAGGGTAACAGGTAACACCAAGGGGAGAGGGCTAGAACCAATTGTACAAGACAAGTGcagggttgccacccgtcagaagctgtaaaattccctgacttttcactgacgtctggacaattttcattcctgcaatttcactcaatacgatcatttttcacgatgcttttcatgatataattccctgacttttcactgacttttataggcttctaaggttttccctgaccttttacaaaattccctgactttttcctgaccttgaaaaatgtttgtttttccctgaccGTGGCAACCCTGAAGTGTGTTGCTCCAAAAAAAttaagacaatttctgctggacgttcgagcagtgagtgcaaaaaagaaagtttccaaagaaacaattacaacacaagaatattttgaatgcatttaagaagaaagtagctataatttagttgccaagctgaccccatgagaaaaaaaataaaattataagtcgcctataagacgctttgtgtcagttttttacaagattggacatcacttttctcaagaatgcttgagaatttaattgcagggttacttggagaactgaactatgtacagtgagatgtttcaaagtgttcaaaatgtaaacgtgccatgcggaacgatttttgcactcgttgcgcaaatgttgagcagaGTCACTTaatatccatacctccccccatagaaggtcactagaaattctgaggggtggagggtcttggaagccaaaaataattataaagctaagctggaatttgtggaggggtggaggccttcaaacaaaaaggccttctgagggagaggaatagaatgatgttttatggaacAATCAGATTTAGTATAAACTAATTTTATTGCTTTCACCTAATACAGGGTTCAGAAGTAACCATCCTTTTAACTTGTACTGAATACAACATGATTTGTTaaaaat

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16801 all species →	MSL1_dimer	Dimerisation domain of Male-specific-Lethal 1	Coiled-coil	Interproscan
PF15275 all species →	PEHE	PEHE domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029332 all species →	Domain	PEHE domain	Interproscan
IPR031840 all species →	Domain	Protein male-specific lethal-1, dimerisation domain	Interproscan
IPR026711 all species →	Family	Protein male-specific lethal-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21656 all species →	MALE-SPECIFIC LETHAL-1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0043984 all species →	Biological Process	obsolete histone H4-K16 acetylation	Interproscan
GO:0072487 all species →	Cellular Component	MSL complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13163	MSL1; male-specific lethal 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.