Gene detail

Detailed information of PcrG017377.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_112:4045616...4051571
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG017377.mRNA1

ATGGTTATTTTGTTCTTCTTTGTGACCTTGTTCTTTGCAAGTGCAGCCTTTGAGTGCAATTTCGACGAAACAGTGAAGGATGAAGATAAATTACAAGTCCACCTTGTTCCGCACACACACGACGATGTTGGCTGGTTGAAAACTGTGGATCAGTACTATTATGGAACTAAAAGTTTCATTCAGCGTGCTGGAGTGCGGAAAATTTTAAACTCTGTTATTCCGCATTTAATTACAGACCCGTCAAAGCGATTTATTTACGTGGAAATGGCGTTTTTTGAGCGCTGGTGGAAGGAGCAAAATGAAACTATGCGAATGGAAGTGAAGAAGCTCGTAAAAGAGAAGAGACTAGAGTTTATAAACGCTGGTTGGTGTATGAATGACGAGGCAGCCTCACATTACAACGCGATCATTGATCAAATGACTTATGGATTAAACTTTGTGGAGCAGACATTTGGAGCAGATGCAAGGCCTCGAATAGCCTGGCATATTGATCCATTCGGCCACTCGAAAGAACAAGCTTCCATCTTTGCCCAGATGTCATTCGATGGATTCTTCTTCGGTCGTATTGACTATGAAGACAAAACGCTTCGCCTTGAGCAGAAAAGAATGGAGATGGTTTGGAGAGGCAGCAGAAATCTTGGACAAGATTCTGACATTTTTGCTGGTGTTCTTTACAATGGCTACCAGCCACCCGAGGGATTTTGCTACGATCTGCTTTGTGAAGGCCAAGAAACCTTTGATGTTAATGACAGGGCAACAGTGGATAGATTTGTGGAAGCAGCGTGCGAACAAGCATCGCAATACAAAACAAACCACATCATGTTCACAATGGGTTCTGATTTTCATTACCAGAATGCTGCCATGTGGTTTGATAATTTGGACACGCTTATCAAAAATGTAAATGCTGATGGTCGTGTGAATGCATTCTACTCTACACCAACAACCTACTTAGATGCTCTGCACAAAGCCAACCAGACATGGGAGCTGAAGACTGATGACTTCTTCCCTTATGCAGACTGTCCACACTGTTACTGGACTGGTTATTTCACTAGTAGGCCAGCACTCAAACGATATGTCAGATACAACAACAACTTGCTTCAGGTCTGTAAGCAGCTGGAGTTAATAAATGGCCCCTTAAAGAAGAATGGTCCAACTTCTGATACTCTGCGCAGAGCCATGGGTGTGGCACAACACCATGACGCTGTCAGTGGTACATCAAAACAGCACGTGGCTGATGACTATGCCAAGCGACTTGCTACTGGTGCAGCGGAATGTCAGAAGTTGATTGGTAAAGTGCTTGGTAAATTCGCGGTGAAGAACCCTGAAGCCAAGACTCCTGCGTTCACGTTTTGCGACCACCTCAACATCAGTGTCTGTTCGGTGACTGAACAAAGCAAATCTTTCACCGTGACTGTCTACAACCCCATTGCTCGAGATGTTACCAATATTGTTCGCCTGCCAGTGGCAATGGCTTTAGTGGCTGTGTTTGGCCCACAAGGCAACCCAATCGAAAGCCAAGTGCTGCCGATCTCTGAAGCAACGAAACAGTTGCGTCGAAATCAGAACCAGACACAGAGCCATTCATCATACGAGCTCGTTTTCACCGCCAAAGTCCCAGCCCTGGGTTTTGCCACTTACTTCATAAATTCGACTAAGTCGCTCTCGAGACTACAAAGGAAGATTTTACCACCCGGCCCTAATCACGGGAATACCGATGAACTATCCATCGAAAATGAATTTATCAAACTCTCCTTCTCGCAGGACACGGGCCATTTGATAAGCATGACTGATTTGAATTCCAAAATCACCACTACAATAAGTCAAGCATTCTTCTGGTACAAGGGCAGCGAGGGTGACGAACTCAGCACTCAGGCCTCCGGTATGTACATCTTCAGACCCAGTAGTAGCCACCCGAATCCGATCCCTATGGACAACAGAGCAAAGATCTTCAAGGGTCCCGTGGTACAGGAGGTACGCCAGGTCATCTCTCCTTACATCAGCCAGGTGATCAGGCTTCATGCTGGTCAGCGGCATGCAGAGTTCGAGTACACTGTAGGACCGATACCTGTAGGGGATCACTGGGGTAAGGAGATAATCACCCGGTTTGACACGGATATCAAGTCCAACCAGCTCTTCTACACTGATGCCAATGGAAGGGAGATGCAGGAACGTAAGAGGAACTACCGACCGACTTGGAAACTTGACATCACTGAGCCAGTTGCTGGGAATTATTACCCGGTGAATAGTCGAATGTACATTAAGGACAGTGATAAACAGCTGACAATGTTGACTGACAGGTCCCTGGGTGGGTCCAGCATGAAAGACGGCTCTATGGAAATCATGCTTCACCGTCGGCTGCTTGTAGATGACTATAGATGGGTGGGTGAGACGCTCAACGAGACAGGAATCCTCGGTAAAGGTTTAATCGTCCGCGGAAAGTTGTGCCTGACTCTTGCGCCACCAACGTCTTCAGCTGTTGTTCATCGCGAACTTGGCGAAAAGCTTCTTCTGGAACCCGTGCTGACCTTTGCACCTAACAGCCTCAATTTCAAGCAGTGGTCGAGCCAGTTTAATTCGTTGCACAGTGGTCTAACTCGTGAACTTCCCGCCAACGTTCACCTGCTGACACTAGAGACCATGCAGGATAGCGTGTTAATCCGCTTGGAGCATCAGTACGAGGCTGGTGAGGATGCCAAGCTGTCTCAACCTGTCAACATCTCACTTGCGGGGCTTTTCACAGAATTTGACATCGAGTCCATGACTGAAATGAACCTGGCTGCCAATCAGCTGCTGAAGGATAAACAGCCTCTTCACTGGAATATACAATCgaagaagaacattgatgaaaacaagacgaaaaagaagaGAGTATCTCGAGCGGCGTCTGATTTGAACGTGGAGCTCAACCCAATGCAGATCCGTACCTTCAAAGCTATCATCAAACGCCGAGGAATTTCTTTCTATTATAAGTAA

Transcript

PcrG017377.mRNA1

GTGCACTGTCTTTCGTGAAAGCAAAACACTTTTGCCTTCTCACTTTTTTCTTTTGAATCAGCGCACCTCACACATGTCACATGTCACATCAGTTCCGTCCAAGATTTTTTTAAGAAATGGTTATTTTGTTCTTCTTTGTGACCTTGTTCTTTGCAAGTGCAGCCTTTGAGTGCAATTTCGACGAAACAGTGAAGGATGAAGATAAATTACAAGTCCACCTTGTTCCGCACACACACGACGATGTTGGCTGGTTGAAAACTGTGGATCAGTACTATTATGGAACTAAAAGTTTCATTCAGCGTGCTGGAGTGCGGAAAATTTTAAACTCTGTTATTCCGCATTTAATTACAGACCCGTCAAAGCGATTTATTTACGTGGAAATGGCGTTTTTTGAGCGCTGGTGGAAGGAGCAAAATGAAACTATGCGAATGGAAGTGAAGAAGCTCGTAAAAGAGAAGAGACTAGAGTTTATAAACGCTGGTTGGTGTATGAATGACGAGGCAGCCTCACATTACAACGCGATCATTGATCAAATGACTTATGGATTAAACTTTGTGGAGCAGACATTTGGAGCAGATGCAAGGCCTCGAATAGCCTGGCATATTGATCCATTCGGCCACTCGAAAGAACAAGCTTCCATCTTTGCCCAGATGTCATTCGATGGATTCTTCTTCGGTCGTATTGACTATGAAGACAAAACGCTTCGCCTTGAGCAGAAAAGAATGGAGATGGTTTGGAGAGGCAGCAGAAATCTTGGACAAGATTCTGACATTTTTGCTGGTGTTCTTTACAATGGCTACCAGCCACCCGAGGGATTTTGCTACGATCTGCTTTGTGAAGGCCAAGAAACCTTTGATGTTAATGACAGGGCAACAGTGGATAGATTTGTGGAAGCAGCGTGCGAACAAGCATCGCAATACAAAACAAACCACATCATGTTCACAATGGGTTCTGATTTTCATTACCAGAATGCTGCCATGTGGTTTGATAATTTGGACACGCTTATCAAAAATGTAAATGCTGATGGTCGTGTGAATGCATTCTACTCTACACCAACAACCTACTTAGATGCTCTGCACAAAGCCAACCAGACATGGGAGCTGAAGACTGATGACTTCTTCCCTTATGCAGACTGTCCACACTGTTACTGGACTGGTTATTTCACTAGTAGGCCAGCACTCAAACGATATGTCAGATACAACAACAACTTGCTTCAGGTCTGTAAGCAGCTGGAGTTAATAAATGGCCCCTTAAAGAAGAATGGTCCAACTTCTGATACTCTGCGCAGAGCCATGGGTGTGGCACAACACCATGACGCTGTCAGTGGTACATCAAAACAGCACGTGGCTGATGACTATGCCAAGCGACTTGCTACTGGTGCAGCGGAATGTCAGAAGTTGATTGGTAAAGTGCTTGGTAAATTCGCGGTGAAGAACCCTGAAGCCAAGACTCCTGCGTTCACGTTTTGCGACCACCTCAACATCAGTGTCTGTTCGGTGACTGAACAAAGCAAATCTTTCACCGTGACTGTCTACAACCCCATTGCTCGAGATGTTACCAATATTGTTCGCCTGCCAGTGGCAATGGCTTTAGTGGCTGTGTTTGGCCCACAAGGCAACCCAATCGAAAGCCAAGTGCTGCCGATCTCTGAAGCAACGAAACAGTTGCGTCGAAATCAGAACCAGACACAGAGCCATTCATCATACGAGCTCGTTTTCACCGCCAAAGTCCCAGCCCTGGGTTTTGCCACTTACTTCATAAATTCGACTAAGTCGCTCTCGAGACTACAAAGGAAGATTTTACCACCCGGCCCTAATCACGGGAATACCGATGAACTATCCATCGAAAATGAATTTATCAAACTCTCCTTCTCGCAGGACACGGGCCATTTGATAAGCATGACTGATTTGAATTCCAAAATCACCACTACAATAAGTCAAGCATTCTTCTGGTACAAGGGCAGCGAGGGTGACGAACTCAGCACTCAGGCCTCCGGTATGTACATCTTCAGACCCAGTAGTAGCCACCCGAATCCGATCCCTATGGACAACAGAGCAAAGATCTTCAAGGGTCCCGTGGTACAGGAGGTACGCCAGGTCATCTCTCCTTACATCAGCCAGGTGATCAGGCTTCATGCTGGTCAGCGGCATGCAGAGTTCGAGTACACTGTAGGACCGATACCTGTAGGGGATCACTGGGGTAAGGAGATAATCACCCGGTTTGACACGGATATCAAGTCCAACCAGCTCTTCTACACTGATGCCAATGGAAGGGAGATGCAGGAACGTAAGAGGAACTACCGACCGACTTGGAAACTTGACATCACTGAGCCAGTTGCTGGGAATTATTACCCGGTGAATAGTCGAATGTACATTAAGGACAGTGATAAACAGCTGACAATGTTGACTGACAGGTCCCTGGGTGGGTCCAGCATGAAAGACGGCTCTATGGAAATCATGCTTCACCGTCGGCTGCTTGTAGATGACTATAGATGGGTGGGTGAGACGCTCAACGAGACAGGAATCCTCGGTAAAGGTTTAATCGTCCGCGGAAAGTTGTGCCTGACTCTTGCGCCACCAACGTCTTCAGCTGTTGTTCATCGCGAACTTGGCGAAAAGCTTCTTCTGGAACCCGTGCTGACCTTTGCACCTAACAGCCTCAATTTCAAGCAGTGGTCGAGCCAGTTTAATTCGTTGCACAGTGGTCTAACTCGTGAACTTCCCGCCAACGTTCACCTGCTGACACTAGAGACCATGCAGGATAGCGTGTTAATCCGCTTGGAGCATCAGTACGAGGCTGGTGAGGATGCCAAGCTGTCTCAACCTGTCAACATCTCACTTGCGGGGCTTTTCACAGAATTTGACATCGAGTCCATGACTGAAATGAACCTGGCTGCCAATCAGCTGCTGAAGGATAAACAGCCTCTTCACTGGAATATACAATCgaagaagaacattgatgaaaacaagacgaaaaagaagaGAGTATCTCGAGCGGCGTCTGATTTGAACGTGGAGCTCAACCCAATGCAGATCCGTACCTTCAAAGCTATCATCAAACGCCGAGGAATTTCTTTCTATTATAAGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09261 all species →	Alpha-mann_mid	Alpha mannosidase middle domain	Domain	Interproscan
PF21260 all species →	Laman-like_dom	Lysosomal alpha-mannosidase-like, central domain	Domain	Interproscan
PF07748 all species →	Glyco_hydro_38C	Glycosyl hydrolases family 38 C-terminal domain	Domain	Interproscan
PF01074 all species →	Glyco_hydro_38N	Glycosyl hydrolases family 38 N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011330 all species →	Homologous_superfamily	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Interproscan
IPR015341 all species →	Domain	Glycoside hydrolase family 38, central domain	Interproscan
IPR048534 all species →	Domain	Lysosomal alpha-mannosidase-like, central domain	Interproscan
IPR027291 all species →	Homologous_superfamily	Glycoside hydrolase 38, N-terminal domain superfamily	Interproscan
IPR011682 all species →	Domain	Glycosyl hydrolase family 38, C-terminal	Interproscan
IPR037094 all species →	Homologous_superfamily	Glycoside hydrolase family 38, central domain superfamily	Interproscan
IPR050843 all species →	Family	Glycosyl Hydrolase Family 38	Interproscan
IPR000602 all species →	Domain	Glycoside hydrolase family 38, N-terminal domain	Interproscan
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR028995 all species →	Homologous_superfamily	Glycoside hydrolase families 57/38, central domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11607 all species →	ALPHA-MANNOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004559 all species →	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0006013 all species →	Biological Process	mannose metabolic process	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12311	MAN2B1, LAMAN; lysosomal alpha-mannosidase	EC:3.2.1.24	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.