Gene detail

Detailed information of PcrG017455.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_113:894142...910791
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG017455.mRNA1

ATGTCTACGGCTGAATTACCTTGCTACACGTTAATTAATGTGCTTAATGACGCGGAGGCACAAAGCGAGCAAAAACTCGCTGAGGATTTGGAAAAAGGTGACCTCAGGATCAAAACTGACGCTCTAAAGAAAGTGATTCAGCAGATTCTAAATGGAGACAAAATGCCGTCCTTGCTGATGGTGATTATCAAGTTTCTCATGCCGCTTGATGATCACACGATCAAGAAGCTGCTTCTGATTTTCTGGGAGATTGTTCCCAAGACTGGGCAAGATGGAAAACTGTTACAGGAGATGATTCTGGTTTGTGATGCTTACAGGAAGGACCTTCAGCATCCTAATGAATATATCAGGGGATCTACGTTGAGATTTCTTTGCAAGCTTAAGGAAGCTGAGTTATTGGAGCCTCTCATGCCAGCCATCAGAAACTGTTTGGAACATCGTCACTCATATGTACGCCGCAATGCAGTCATGGCAATTTACACCATCTACCGGAACTTTGACTTCCTCATTCCTGACGCCCCAGAGCTGGTACATACGTTTCTTGAACAGGAGCAGGATGCATCCTGTAAACGCAATGCCTTCATGATGCTCATCCATGTTGACCAGGAACGTGCTTTGGATTATCTCAGTACCTGTATAGACCAGGTCAACACTTTTGGTGACATACTGCAGTTGGTTATTGTTGAACTGATCTACAAGGTGTGTCATGCCAACCCAGCTGAAAGGTCACGCTTCATCAGATGTATCTACAACTTGTTGAATTCCTCATCTCCTGCTGTTCGATATGAAGCTGCTGGTACTTTGGTGACTCTATCATCTGCACCAACTGCTGTCAAGTCTGCAGCATCCTGCTACATTGAGTTGATTGTGAAAGAGAGTGACAACAATGTGAAGCTCATTGTATTGGACAGGTTGATTGCTATAAAGGACAATCCAAGCCATGAGAAAGTTCTCAGGGAACTAGTCATGGATATTCTGCGTGTGCTGTCCTCTCCTGATCTTGAAGTGCGTAAGAAGACCTTGCAACTGGTGCTTGACTTGGTCACTTCACGCAACATACATGAGGTTGTAGCCGTATTGAAGAAAGAGGTAACCAAAACTCACAATgacactgagcaggaagaaattggtggatatcgacagATGCTTGTTCGTACCCTTCACACATGCAGTGTCAAGTTTCCAGATGTGGCTGTGTCTATTGTACCACTGCTGATGGAATTCCTGGGTGATAATAATGAGCAGGCGGCATTTGATGTGTTGGTGTTTGTGCGTGAAGCAGTGCAGCGCTTTGAACAGCTGAAACCTGTTATAATGGAGAAGTTGCTGGAAAATTTCCACACCATCAAGACTGTCAAGATTCACCGTCATGCTTTGTGGATCATGGGTGAATATGCCAACAGCAAACAGGACATTTTGGATGTTATGGATGAGATCAAGAAGGGTCTGGGAGATGTGCCCATTGTGGATGACGAAATGAGAAGGGCAGCAGGAGATGCTCCTGAAGGTTCAGAACAGACTGCATCACAGAGTTCAGGAGGACAACGTTTAGTGACTGCTGATGGCACATATGCCACTCAGAGTGCCCTGAGCACTCCTGGAATCACATCTCTGGTGAAGAAGGATGATGAAAAGAGGCCTCCTTTGCGCCAGTATCTGTTGGATGGTGAATTTTTCGTTGGAGCTGCCATTGCTTGCACTTTGACAAAACTTGCTCTGCGCTATCTGGACATGGAGGATGACAAGGAAAAGCAAAATGTTTTGTGTGCAAACAGCATGCTGATCATGGCCAGTATCTTGCACCTTGGAAAGTCTGGACTACCCAAGAAGGTTATTACCGATGATGATGTGGATCGCATCTCACTTTGTGTGCGTGTGGTGGCAGAGCGTGTTCCACTCATGAAGAACATCTTCACTGTCGAGTGCCGCAATTCACTGTCTTCCATGCTGGACGCCAACAAGAGGGGAGAGGAGGAAAAAATGAACAAGGCTGACATAGAGAAGGCACTGGCTATCCAGGTTGATGACCCCATTCCATTCATGCAGCTATTGGCCAAGTCTGATTCAGGGATTACTGAGGATCAGTTTGCATTGGCTTTGTCTCAAGCGGTTGGTTCGGCCGGAAAGAAGGAAGACGAACTGGTTGGATCCAAACTCAACAAGGTGGCGCAGCTGACTGGTTTCTCTGACCCAGTCTATGCCGAGGCGTATGTGAATGTCAATCAGTATGACATCGTGTTAGACTTGTTGATTGTTAACCAGACGTCAGACACACTGCAGAATGTCACACTGGAGCTGGCTACACTTGGAGACCTCAAGCTTGTGGAAAAGCCACAGCCTATCATGCTGGGTCCTAACGACTTCTCCAACATCAAGGCAAATGTGAAAGTGTCATCGACAGAAAATGGAATCATTTTCGGCAACATTGTGTATGACGTATCAGGAGGATCAGGGGACCGTAACTGTGTTGTTTTGAATGATATTCATATCGACATCATGGACTACATTGTACCAGCTACGTGCACTGATTCAGAGTTCAGGCAAATGTGGGCTGAGTTCGAATGGGaaaacaagGTGACTGTGAACACGAATATCTCCGACCTTCGCGAATACTTGGACCATTTAATTGGTTCTACAAACATGAAGTGTTTGACACCAGAAAAGGCTTTAGCTGGTGAATGTGGTTTTATGGCGGCTAATCTGTACGCACGCAGTATTTTTGGAGAAGATGCTTTGGCAAACGTGTCAATTGAGAAACCAAGTGACCAATCAGGACCCTCAGTCACTGGTCACGTGCGCATCCGTGCAAAGAGTCAGGGAATGGCTCTTAGCTTAGGAGACAAGATCAATCTTTCGCAGAAGAAAGTCACCAAGTGA

Transcript

PcrG017455.mRNA1

GTTGACGCCGCCTAGCCGCCATCTTTGTGCTATTAGTGAAATCGAGTATAGTTCCAAGGGTTTCTTGGTGACTTTACGTCGTAATTTTAAACATGTCTACGGCTGAATTACCTTGCTACACGTTAATTAATGTGCTTAATGACGCGGAGGCACAAAGCGAGCAAAAACTCGCTGAGGATTTGGAAAAAGGTGACCTCAGGATCAAAACTGACGCTCTAAAGAAAGTGATTCAGCAGATTCTAAATGGAGACAAAATGCCGTCCTTGCTGATGGTGATTATCAAGTTTCTCATGCCGCTTGATGATCACACGATCAAGAAGCTGCTTCTGATTTTCTGGGAGATTGTTCCCAAGACTGGGCAAGATGGAAAACTGTTACAGGAGATGATTCTGGTTTGTGATGCTTACAGGAAGGACCTTCAGCATCCTAATGAATATATCAGGGGATCTACGTTGAGATTTCTTTGCAAGCTTAAGGAAGCTGAGTTATTGGAGCCTCTCATGCCAGCCATCAGAAACTGTTTGGAACATCGTCACTCATATGTACGCCGCAATGCAGTCATGGCAATTTACACCATCTACCGGAACTTTGACTTCCTCATTCCTGACGCCCCAGAGCTGGTACATACGTTTCTTGAACAGGAGCAGGATGCATCCTGTAAACGCAATGCCTTCATGATGCTCATCCATGTTGACCAGGAACGTGCTTTGGATTATCTCAGTACCTGTATAGACCAGGTCAACACTTTTGGTGACATACTGCAGTTGGTTATTGTTGAACTGATCTACAAGGTGTGTCATGCCAACCCAGCTGAAAGGTCACGCTTCATCAGATGTATCTACAACTTGTTGAATTCCTCATCTCCTGCTGTTCGATATGAAGCTGCTGGTACTTTGGTGACTCTATCATCTGCACCAACTGCTGTCAAGTCTGCAGCATCCTGCTACATTGAGTTGATTGTGAAAGAGAGTGACAACAATGTGAAGCTCATTGTATTGGACAGGTTGATTGCTATAAAGGACAATCCAAGCCATGAGAAAGTTCTCAGGGAACTAGTCATGGATATTCTGCGTGTGCTGTCCTCTCCTGATCTTGAAGTGCGTAAGAAGACCTTGCAACTGGTGCTTGACTTGGTCACTTCACGCAACATACATGAGGTTGTAGCCGTATTGAAGAAAGAGGTAACCAAAACTCACAATgacactgagcaggaagaaattggtggatatcgacagATGCTTGTTCGTACCCTTCACACATGCAGTGTCAAGTTTCCAGATGTGGCTGTGTCTATTGTACCACTGCTGATGGAATTCCTGGGTGATAATAATGAGCAGGCGGCATTTGATGTGTTGGTGTTTGTGCGTGAAGCAGTGCAGCGCTTTGAACAGCTGAAACCTGTTATAATGGAGAAGTTGCTGGAAAATTTCCACACCATCAAGACTGTCAAGATTCACCGTCATGCTTTGTGGATCATGGGTGAATATGCCAACAGCAAACAGGACATTTTGGATGTTATGGATGAGATCAAGAAGGGTCTGGGAGATGTGCCCATTGTGGATGACGAAATGAGAAGGGCAGCAGGAGATGCTCCTGAAGGTTCAGAACAGACTGCATCACAGAGTTCAGGAGGACAACGTTTAGTGACTGCTGATGGCACATATGCCACTCAGAGTGCCCTGAGCACTCCTGGAATCACATCTCTGGTGAAGAAGGATGATGAAAAGAGGCCTCCTTTGCGCCAGTATCTGTTGGATGGTGAATTTTTCGTTGGAGCTGCCATTGCTTGCACTTTGACAAAACTTGCTCTGCGCTATCTGGACATGGAGGATGACAAGGAAAAGCAAAATGTTTTGTGTGCAAACAGCATGCTGATCATGGCCAGTATCTTGCACCTTGGAAAGTCTGGACTACCCAAGAAGGTTATTACCGATGATGATGTGGATCGCATCTCACTTTGTGTGCGTGTGGTGGCAGAGCGTGTTCCACTCATGAAGAACATCTTCACTGTCGAGTGCCGCAATTCACTGTCTTCCATGCTGGACGCCAACAAGAGGGGAGAGGAGGAAAAAATGAACAAGGCTGACATAGAGAAGGCACTGGCTATCCAGGTTGATGACCCCATTCCATTCATGCAGCTATTGGCCAAGTCTGATTCAGGGATTACTGAGGATCAGTTTGCATTGGCTTTGTCTCAAGCGGTTGGTTCGGCCGGAAAGAAGGAAGACGAACTGGTTGGATCCAAACTCAACAAGGTGGCGCAGCTGACTGGTTTCTCTGACCCAGTCTATGCCGAGGCGTATGTGAATGTCAATCAGTATGACATCGTGTTAGACTTGTTGATTGTTAACCAGACGTCAGACACACTGCAGAATGTCACACTGGAGCTGGCTACACTTGGAGACCTCAAGCTTGTGGAAAAGCCACAGCCTATCATGCTGGGTCCTAACGACTTCTCCAACATCAAGGCAAATGTGAAAGTGTCATCGACAGAAAATGGAATCATTTTCGGCAACATTGTGTATGACGTATCAGGAGGATCAGGGGACCGTAACTGTGTTGTTTTGAATGATATTCATATCGACATCATGGACTACATTGTACCAGCTACGTGCACTGATTCAGAGTTCAGGCAAATGTGGGCTGAGTTCGAATGGGaaaacaagGTGACTGTGAACACGAATATCTCCGACCTTCGCGAATACTTGGACCATTTAATTGGTTCTACAAACATGAAGTGTTTGACACCAGAAAAGGCTTTAGCTGGTGAATGTGGTTTTATGGCGGCTAATCTGTACGCACGCAGTATTTTTGGAGAAGATGCTTTGGCAAACGTGTCAATTGAGAAACCAAGTGACCAATCAGGACCCTCAGTCACTGGTCACGTGCGCATCCGTGCAAAGAGTCAGGGAATGGCTCTTAGCTTAGGAGACAAGATCAATCTTTCGCAGAAGAAAGTCACCAAGTGAAGAGTATAGAGTCCTAGTACCACTGCAAATTAATTTTAACCGCTAGTCCCTGCAGTGATTTGCGTGTCACATAACTTAGATGTCAGTTACACTAAAGATTGTTGTTCAAGAAGGTCCTAAGCAGTTAAGTTTTGATAACAGTTACACCAAGTAAACAGTAAAAAACTTCGCGTGTTACTAACTCCTCCTTAGATACAGAGAGTTTGTAACGTCTGTGATGCTTGTTACGTCTATGACGTATAAGAATGTGAGAGCTTGTTACGTCTATGATGTATAAGAAACCTTTTCCGATCGCGTTTGTCATGTCGGAGTTCAATGTACTCTCCTTTGGGTTCATTTTTAAGGTATTCGCTTTTTACTGTGGGACTAATGTAGGAATAATTTGAATCTGATGTATTAGTATAAAGCAATAAATTCAGTTGAGATT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF14806 all species →	Coatomer_b_Cpla	Coatomer beta subunit appendage platform	Domain	Interproscan
PF07718 all species →	Coatamer_beta_C	Coatomer beta C-terminal region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR029446 all species →	Domain	Coatomer beta subunit, appendage platform domain	Interproscan
IPR016460 all species →	Family	Coatomer beta subunit (COPB1)	Interproscan
IPR011710 all species →	Domain	Coatomer beta subunit, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10635 all species →	COATOMER SUBUNIT BETA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0030126 all species →	Cellular Component	COPI vesicle coat	Interproscan
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17301	COPB1, SEC26; coatomer subunit beta	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.