Gene detail

Detailed information of PcrG017596.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_115:63530...79547
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG017596.mRNA1

ATGTCTGGATTTCGCACGCAGTACACTCGATTGAACTCAAATTCAGATGATCCTGAAGAGGACTTACCTCCGCAAGGTTTCGATATTGGCGCCCGCGGATTTGAGGAAGTCGAAAAAGGACGTTGGAATCACATAGAGAATCTTGATGAATTCTTCATAAGGATATATGAATATCACAGGAATCATGGATTTGTTTGTATTCTCCTGAATGAGATCTTTGAACTAATTCAATTTGTGTTTGTGGTTTTATTTACATCATTCCTGATTCTCTGCGTGGATTATGACATCTTGTTCAACCATAGGAATCCTACATTCTCTAATGTAGTGCATTTTCACAAAGTACAACATATGGAACCTGCCATAGTTGTCTGTCTTGTCTTAGCATTCATTTTCTGGCTGATTCGTGTAGCAAGAATTGTGATCCATTTCTTTAAGCTTTTGGAAATGCGGGCATTTTATAAAAATGCACTGAGAATATCAGAGAGTGAACTAACAAACCTTCAGTGGCAAGATGTTCAGAAGCGATTAATAGAAGTTCAGAAAGTTCATCAGATGTGTGTACACAAGGAAGAAGTGACAGAACTTGATATCCATCATCGCATTCTGAGATGGAAGAACTACATGTTGGCAATGCAGAACAAGTCAGTCATTTCTTGTACATACAATTTTCCATTTATTGGTGAAAGAGCATTTTTAACAGAGGGAATGAAGTACAACCTCAAACTGATTTTATTCTGGGGCCCAGGAAGTCCTTTCCAAAACAACTGGAAACTAAGAGAAGAATTCAGGAATCCAGCCAACAGATTTGTACTTGCAAACCGGTTGGCTAAACGCATTTTCTGGATTGGAATAGCAAACTTTGTACTTTCCCCTTTCATTATTATTTGGGTTATTTTGTATTCGTTCTTCACTTATGCTGAGATGGTGAAAAGAGAACCTGATACTTTTGGAGCACGCAAATGGTCCTCCTACGGCAGATTGTTTTTCCGACATTTTAATGAATTGGATCACGAACTCCAGACCAGATTGAGTAAAGCGTACGAACCAGCCACCAAGTACATGAATCTTTTCGTGTCTCCTTTCATGGCCATCATAGCCAAGAACTTGGCATTTTTTGCTGGAGCGCTGTTCGCTGTGTTGACAATATTTACACTTCTGGACAGAGATGTTCTCCTAGCCGAGCACGTGCTGACTGTTATAGCAATATTAGGGTTAATAATACGAGGATGTTACATATTTATACCTGATGAGAATACTGTTTGGGACCCTGAACAGCTGTTAAAGCAAATCGTGTCCCACACTCACTACATTCCTGATTCGTGGAAAGGAAAAGCACACACTAAAGAGGTGCGACAAAAGTTTTCTCAAGTATTCCAGTACAAAGCGGAATACGTGATTCAGGAGCTATTCAGCCCTATTGTGACACCTTTCCTTCTGTGTTTTAACCTACGCTACAAATCTCTTGATATCGTGGATTTCTTCAGAAATTTCACTGTTGATGTTGTTGGTGTTGGAGATGTGTGTTCCTTTGCACAGATGGACGTTAAAAGGCATGGAAACCCAGAGTGGCTAACTCAAGGATTAACAGAAGCAACACAATATGAACAAGCGGAGCATGGAAAAACAGAACTGTCTCTTGTTCATTTCTCTATAAGGAATCCAACTTGGAAACCAACAGAACAAGGCGCTCAGTTCATCAGCACAATTCGGGAAAATGCGGTCCAGGAAGGTTTGAACCTGAGTCACAGTGCTGCTATGTCTGAAGCAAACTCTCTTCCTGATTACAGATCGGCTAGTTTTACAGGCTTGCCTTACATTAATCCCATGAGCCTCAGCGATCCGTCTCTTACTCCACTGGGGGCTACAACCGCTGTAACACCAAAACAGCAGGCTCAAGCAAGGGAGATGTTCATGAACTCCAGTATGATGTACATGCACGAGTTGCGAGATCGTCAAGTTGAACAGCTCGGACCTCCACGAGTTGCCAGCTTGACAGCGACAACAAGACAGCAGCAGCCATCAACATCCGCTCAACTTTTTGAAGAGGAGAGTGAAACAGAACAGCCAAGGGACGACCCGGGCATAGTGTGA

Transcript

PcrG017596.mRNA1

cacatttccattaccatctggggcttgcttttggagccatttttgtttacatctgcataaaatttagtgttacagtgcatttttttaaatttaactgtttaatgtgatccaagcaaaaatttaagtgttgagtgttatcgaagtacccccatccagaccAGACCCTCATATACGGAGGAACAGAATTTAAAcccacccggtgttcgggaagtctttggttcgatttcccgtcgggatgcagattttctctttgcactatgttaattatttcatgtttCTTTTTTCTTTTCATTGATCTGACTTTTTTTCATTGACATTTGCAAGCTAAAAATCCGCCATGTTTCCTTATTCGTCATCCCAACCTAAATCAGCCTTCGATCAGTGTTATTCCTTGTAATGCATAGTTCAGTTGTGAATACCGACATTTCTGTCATCACAAAAAACTTTTTTTTTAAAACGAGCCCCGTCATCCGGCGAATAAGAGGAAAACACAAGGTACTCAAGGAGACGTTGTTGATAAGACTTTGTGTACTTTTGGTTAGAGTTGGGACTCAAATTGATAATTGTATTTCGTGCAGACAAATAAATACAAAATGCCTGCAAAAAAACTTGCCAACACCAATAGTTGTTCCTCAAAACCTGCTAAAAACATGGAACAATACGGGGAAATATCCCATCTGACCTCCTATCACAGTTGTGTGTTGAGAAACTGTTCTCTACAACTGCTAAGCTATCATTTCGAGGCGCAGAAAGTAAGGCAGAGTACAGCTCATTTTCGCCAGCAGAGAGAAGAAGTGAAGAGCTTATTTTTGGAAGTTTAGGATACCTTTTGAGTATACTCAGCTCGCTCAGTACTTCACTTGTTTAGGTGGACTTGCAGACTCATGACAGCTCACATCGACGACAAAGTCAAGGTCAAATTTAGACCGCGTGGCTTTGGTGTGGCCTGGACCCGGAAGTCATCCGCGCATGCTCTGTTCAACATAAACAAAACTATTGAAAAAATTTCGACATAAAAAGACCTGACGAGAGACGGGGCGATTTGTGGAAATTCAGGTCCCTTTTCAATTCCTGGAAATATAGCAAGGAAGAACTGCTACTACGCTTGATTAAAAACAAGTTTGGAACTGCTAAAAAACATCAACAGAGATACAGAAGATTCCACAGAGTTTGTGTTCGCGATGATGACGCATCTGTAAAATGGCGTAGTTGTAAAATCACTCGCATTGTTGATGTTGCAAAAAATTAACTTTCCTTGGAAAATGCTTCTGGCAAAATGGTTTTAAGGATATGATCTTCAAGAGGAAACATTTGTGCATTGTAATTTGTTTTTGCCGTAGTACAGCTGTGACGCTGTAACGTTTTATGCATGAAAAGACGGAGATTAAGATTCACACCGAAATAACGTGACTTTGGTACCAGGAGTCTAGAGAATATTAGGAGGCATGTCTGGATTTCGCACGCAGTACACTCGATTGAACTCAAATTCAGATGATCCTGAAGAGGACTTACCTCCGCAAGGTTTCGATATTGGCGCCCGCGGATTTGAGGAAGTCGAAAAAGGACGTTGGAATCACATAGAGAATCTTGATGAATTCTTCATAAGGATATATGAATATCACAGGAATCATGGATTTGTTTGTATTCTCCTGAATGAGATCTTTGAACTAATTCAATTTGTGTTTGTGGTTTTATTTACATCATTCCTGATTCTCTGCGTGGATTATGACATCTTGTTCAACCATAGGAATCCTACATTCTCTAATGTAGTGCATTTTCACAAAGTACAACATATGGAACCTGCCATAGTTGTCTGTCTTGTCTTAGCATTCATTTTCTGGCTGATTCGTGTAGCAAGAATTGTGATCCATTTCTTTAAGCTTTTGGAAATGCGGGCATTTTATAAAAATGCACTGAGAATATCAGAGAGTGAACTAACAAACCTTCAGTGGCAAGATGTTCAGAAGCGATTAATAGAAGTTCAGAAAGTTCATCAGATGTGTGTACACAAGGAAGAAGTGACAGAACTTGATATCCATCATCGCATTCTGAGATGGAAGAACTACATGTTGGCAATGCAGAACAAGTCAGTCATTTCTTGTACATACAATTTTCCATTTATTGGTGAAAGAGCATTTTTAACAGAGGGAATGAAGTACAACCTCAAACTGATTTTATTCTGGGGCCCAGGAAGTCCTTTCCAAAACAACTGGAAACTAAGAGAAGAATTCAGGAATCCAGCCAACAGATTTGTACTTGCAAACCGGTTGGCTAAACGCATTTTCTGGATTGGAATAGCAAACTTTGTACTTTCCCCTTTCATTATTATTTGGGTTATTTTGTATTCGTTCTTCACTTATGCTGAGATGGTGAAAAGAGAACCTGATACTTTTGGAGCACGCAAATGGTCCTCCTACGGCAGATTGTTTTTCCGACATTTTAATGAATTGGATCACGAACTCCAGACCAGATTGAGTAAAGCGTACGAACCAGCCACCAAGTACATGAATCTTTTCGTGTCTCCTTTCATGGCCATCATAGCCAAGAACTTGGCATTTTTTGCTGGAGCGCTGTTCGCTGTGTTGACAATATTTACACTTCTGGACAGAGATGTTCTCCTAGCCGAGCACGTGCTGACTGTTATAGCAATATTAGGGTTAATAATACGAGGATGTTACATATTTATACCTGATGAGAATACTGTTTGGGACCCTGAACAGCTGTTAAAGCAAATCGTGTCCCACACTCACTACATTCCTGATTCGTGGAAAGGAAAAGCACACACTAAAGAGGTGCGACAAAAGTTTTCTCAAGTATTCCAGTACAAAGCGGAATACGTGATTCAGGAGCTATTCAGCCCTATTGTGACACCTTTCCTTCTGTGTTTTAACCTACGCTACAAATCTCTTGATATCGTGGATTTCTTCAGAAATTTCACTGTTGATGTTGTTGGTGTTGGAGATGTGTGTTCCTTTGCACAGATGGACGTTAAAAGGCATGGAAACCCAGAGTGGCTAACTCAAGGATTAACAGAAGCAACACAATATGAACAAGCGGAGCATGGAAAAACAGAACTGTCTCTTGTTCATTTCTCTATAAGGAATCCAACTTGGAAACCAACAGAACAAGGCGCTCAGTTCATCAGCACAATTCGGGAAAATGCGGTCCAGGAAGGTTTGAACCTGAGTCACAGTGCTGCTATGTCTGAAGCAAACTCTCTTCCTGATTACAGATCGGCTAGTTTTACAGGCTTGCCTTACATTAATCCCATGAGCCTCAGCGATCCGTCTCTTACTCCACTGGGGGCTACAACCGCTGTAACACCAAAACAGCAGGCTCAAGCAAGGGAGATGTTCATGAACTCCAGTATGATGTACATGCACGAGTTGCGAGATCGTCAAGTTGAACAGCTCGGACCTCCACGAGTTGCCAGCTTGACAGCGACAACAAGACAGCAGCAGCCATCAACATCCGCTCAACTTTTTGAAGAGGAGAGTGAAACAGAACAGCCAAGGGACGACCCGGGCATAGTGTGAACGAACAGTGGACGAGTTTGTCGAAAGAAACAACTGTTTGATGTCAAGGAGCTCGCTGGGTATCAAGACTGTATATGCCACACAAGCTGCTGGCACAGTGAACTTTTCCTTGAAACCGAAATCTATGTTATCTTTTGCTGAGTTCCACAACTGTACATCTCTTAATAATTTTCTTTATTTTACAATTTATGGCATATATCTTGAGGGTGGGTGGTTTCAAAAGGCGAAAGCAAGGTGGAATAGTTAGATGTTGCCACGGTTGTCATATAATGTATAGGTTTAAAATAATGTGTTCAAGTTTATGGTGTGCACATATTTTGCGAAGATTAAGTTATTCAGCGTCGTATTTTATTGAATTGTGTGAGGTTTTACATAATCAGCATGGAGTGATTGTTTACTATGAACTTTTTTCTCTTGGGTTGTAACGATTGTATCACTTGCAATGATTAGTACAAAACGAGAAATAAAATGCTTTATTTTCTTC

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004353 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04109 all species →	ATG9	Autophagy protein ATG9	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007241 all species →	Family	Autophagy-related protein 9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13038 all species →	APG9 AUTOPHAGY 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006914 all species →	Biological Process	autophagy	Interproscan
GO:0000407 all species →	Cellular Component	phagophore assembly site	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005776 all species →	Cellular Component	autophagosome	Interproscan
GO:0034497 all species →	Biological Process	protein localization to phagophore assembly site	Interproscan
GO:0044805 all species →	Biological Process	obsolete late nucleophagy	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17907	ATG9; autophagy-related protein 9	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.