Gene detail

Detailed information of PcrG017724.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_117:957820...968042
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG017724.mRNA1

ATGGCGACGGAACCGGGCTTTGTTCCGACGTCTGTAAATGTAGACATTGAAGGCGATATTACGGTGCCTGGAGCCCCTGACGAGGACGAAGGACCTAATACTTTAGATGAACCAGTTTCAGCAACATTAAAGCGAGATTTAACAGCAGTGGGCAAAAAATTTCTCCATGTACTTGTGCCAAGACAGAGCAAGAGCTTACTTAGAGACTGGGATCTATGGGGTCCTTTAATCCTTTGTGTACTTCTGGCCATGATGCTTCAAGGTCACACAGTAGCTGACAGCAACAGTGATGGTGGACCACAGTTTGCTGAGGTGTTTGTGGTTGTGTGGGTAGGAGCTATAGTGGTCACTGTCAATTCAAAGTTACTTGGAGGTACAATATCATTTTTCCAGAGTGTTTGTGTGCTGGGATATTGTATTCTACCCTTGGACATAGCACTTACAGTTTGTCGACTCATTTTACTCACCAAGCAGACTGACGCCTTATTTGCTGTTAGATTTATTCTTGTCATATTAGGATTTGTGTGGTCAACTTTTGCTTCCATCAAGTTCCTCGGGGATAGCCAGCCAGCTAACAGAAAAGCTCTTGCTGTTTATCCGATAGCCTTGTTTTACTTTGTCATTAGCTGGATGATAATCTCTCACTCGGGCTAGTAGTAAATTGTACTATAAATTAAACTTACCTCTTCCGGTCCAAACTAGCGCTTCCGTTTTATAAAAGCGGAAGTTTGTGTCAGCTTCCGGTGTGTCTGCCGTTGCGTTGTTTTAGCGAAAGAACTTTTTTTTCACGCAAGGAATAAAGGTTGCACGGCAAGGCAAGAGAGAATGCGTTGTATCCTTTAGAAGGAAGGGATTGTTTTTAGATTTCGTTTCAGATATTTGAGAAAAAATTAATATCTTCCGGCCGAATTTCCTTCTTTCCCGCTAGTCGACAACATTTTCTATTTAGCGTGACAATCGTCCTCTGCTGCTTTCTTTCCACTTGTCACGCAAGTTTTGCTCCCGCGTGACGAGCCGACGGAACATCACACTTCGTTATTCTTCACTTTTTATTCGTTATTAAAATTATGTACTCCAGTATTTTCCGTTATGAGTTGTGCACACAGAAACGTACTTTAGAAAAAATTCCTCATGACTTCACTGTGTAGTGGTGTAAGGTTTCTTTTAATGATAACGGTTCTTTAAGTAGTTGATACATTCGATACTCGTATTTAAGGAAATTTTCATGCATTCGTAAACGAAGTAGGTACACGTAAGGCAAAAGCTATCGTGTAAGTTACATTCATTGTCAACCTTGTGAATGTTTTAAAATAAGACGTGAAGCTGACAATGTGAAAACGTTATCGTATCATTAATGTAATATTGAGAATAGTCTCCTGGAAATAGCAGCTATTTATATTCTGAGTTTCAGTATGATTAGCTAAAAAAGGCTGCGAAGGAGTCTAGTAAACTCCATGACTGTTATATATAGTTACTTAGTTTAGTCATTGaacaaaagaaacaaacaaataaacagactaacaaaAACGTTTCTTGCAAAAGATGCCCTCCCTTTCATAAAATCAAGGGAGGTGCAACGTGGAAAGCTTTTTACCTGGACAACAAGTTAGTGTCCACAAAACTACTAAGGGGATATGTCTTAGTTGAGCACCTTtgcaactacactctttttttatatttaagaatattgctttcccgacccaggcttaatattcttatttttctgctgattttagtctgaaaatattcttatgaatattcttagattaagaatttatagttcatgccttttgtgctgcataccttacatcagtgtgtattacatgaaccattcatcgaactgtattagcatagaacaatggccttgatattggtgattatccttttattggctagttttgcccttgagagaaagaaagttatattgtattttcaaatttttaaccccaaaattatattcttttcaaaatctcagcctttggtttattcttaaaatattcttaaaatttcgcaagtttcagccccgatattcttataaattatattcttatagagaaaaagagtgtattgtagaacATATAGGAGGCCTGTAAAAACCATTAAAATATTAAAAGGTGTAACAATCTAGCACGGAACGGCCACAGTAGTTTTAGTTGGAGGGTGTTTTGTGGAGGCAAATTGGGGAACAACTAAGTTGTGTTATCAGAGGTTAATAACAGTTTAATACGCAGAAGAAGTAGGGATTTTTACTCACTTAAGCTTACAAAGATTATTTATGCCTTAACGTAAGTTGTGGAGCATTTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04893 all species →	Yip1	Yip1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006977 all species →	Domain	Yip1 domain	Interproscan
IPR045231 all species →	Family	Protein Yip1/4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21236 all species →	GOLGI MEMBRANE PROTEIN YIP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22943	YIPF6; protein YIPF6	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.