Gene detail

Detailed information of PcrG017918.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_118:1954144...1972022
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG017918.mRNA1

GAAAAAATGGCGGCAGATTGCAATGTTTTGATGTTAGAAGCCTTAGAAGAAATGCTTTCAAATTCTCTTGCGATCTGCAGTTAACAACATCTTCTGCTTGGCATCGATTCGCATATGCAGGATGTCTTCTGTTGCCCTGTGGGTAAAGCCAGATGCGTTTGATTTCGGAGCAATCCACGCACCTTTGCCTCCGAAACTGACGTTGCATAACTTGTACAAGTTATCTATTTATGCTAGAAATAAAGGAAAAGCTGCATTTCCCAAGTTAAGCTACTCAGTGTGGAAGCATGTGGCTTGTAACAAGTTATACATATCAGAGGATCTGGCATGGCTATATTTTGAAACTTTTGATACATTAAGTGGATCAAGTTTCAAAAAACATACAAGTTGGAACAAAAGTTTTGCTCAGTGTAGAACTATAGAGGAAATTGATCATCTCAGATCTCAAGGCTCAGTTAGCACATTACAATTCATCTTATTTCTTTACATTCAACAAATCCACAAGATCTCATTTAAGGCGTCGCTGGTGTTAGGAGGAGAGGAATGGCCAACACGTTCAAGGTCTCCTGATCTGGAAAACAAGGGATCTGTTGCAGTCAAGAGTCTTGATGAGCATGATCACATGATGTTTGTATTACATCATTTAAATGACATCTTGGAACTGTTAATGGAACCAGAATCCAGTGCGAATGGCAGTGGCAGTGAAGCCTGCCTCACTGTGGAAGCTCTTGATGCTCTTGGTTTTCTCATAACAGGAACAATTGATAGAAGAACCATTTACCCTCTACAAGAGGTAGCCTGTCTTCAGTCAGAGAGACCCAAGTGTGGCTATTCCAAGATCTCCAGAACCTTTTCCTTTCGGCAGCTTCAGTCTTGGCTGAGATCCAACCTGCAAGTGAATCCTTTTGGCGTGTCAGCCATCCTTGCTCACAGCTTCAAACAACATCATGAAGCAGAAGGGCAAAATTTTCTAAGCCTTAGTGACACATTTGATGAACACAGTCTTCTGAGTCGCCACCATGAATTGGAACACAGCACTGTGGCCAGCAAGGAAATATCCACTAACAGAAGTCGCATCATGAGCAATATCAGCCATGCTCCCCCAGAGCAAAGAGTTATAATTCTATCTCAAGTCTGCAAGCAAACTGTGGCGAAGAACAGTGATTCATACTCTGGCAGTACAGTAAAAATTCACAGATGCCACTACTCATACATTTACATCCTGTGTCCTTTGAGGGCTGTTACTGTAGAGAATTGTCACAATTCCACGATCGTTCTTGGCGTGACGAATACAGCTGTCAACATTATTGGTTGCTGTAATTGTACGGTTTTTGCAGTCTGCGAGAGAATCTCATTCAGTGGCTGCAGCGACTGTTCTTTTAATCTCTGCACGCCAACCAGACCTGTTATCCTCCCTGGAAATGAGAAAATAGTGTTGGCTCCATATCACACTTACTACCCCAGCCTGGAGGAACATTTACAAGGCCCTTGGGGGGTCCCCATAGAACCAAACTTGTGGAATGATCCTCTTGTACTCGCACCCGACCGTTCCGAGGGTCCATCGACTATTTACAGTGAACTTCCACCTAAAGAGTTCTTTACATTCACCATACCGTTCTCCATGAAAGGATCCACGGATGGACCACCCATTCCACTTCCAAGAAAGTACGAGAGGGCGTTAAAAGAACGGGAAAAGGCTATCAACAACTGGTATCAAGTAGTTAAAACTTCATCTTTGACTAAGGAGCAAAGAAGACAGCTCCAGAAAGATGTACAAGATAGATTCCAGGAATGGCTTGCAGACAGTGGTCATGCTACTCAGCTGAATGGCCTTGTGCCGCCACATTCTGGCAAGTCTTGAAAGAAAGAGTGAAACAGAAATACCAGTGGCTAGTATTACTTCCAAGTGAAAGCTTCGAGACAGAATGAATCCACCACGCACAAATAAGAACGACGTCCAAATTAAAAGTTAACATCCGTGGATTAGCACGTGCCAGTATCCGAGAACTTAACAGTTACAGTGTAATTGTATATGGTCTCTGTTGGTTTGCGTCGGTTCTGTCTAACAGGAAAGAAGCTAAGAATTAGAGCTCACCCATAAGAAAGCCTACTTTGCAAGTTCATTCTAGGAGTGGAGGCAGTTTACAGTACGGCTTGTGTGTGTCTAGCTTGTGATTCACAGAAAGGCGAATGCAAAGAGAAACACTGTGTGCATTTCGATTTGAAAGACTTTGTACCGAGTTGTACATTTATAAGAGTGAAAGTACATTGACATTACAGCCTCTGTCATTGTGTCATTCACAGTTAGCTAAGTAAATGCACTTCAACTAGGAAAGAGAAACAGATCTACACTCCAATATTGAAGAACATTAGCCATATGAATATTTGAATGCCACAATACAGAATATTAACGCTACAGTCGTTGCAAGGACGGCTCGCGTGCcaggcagcccgccttccagtagactataaaacattattatatctcttagatagtacgcgcagcgattggtcaatttagcgggccgtattctacagtacggcccgctaaatctaaaattttgtttttgcgcgctctatttcaagagaaagagatataataaatatcttactaacctcgtttctcggtcccagggtacaaagaagttcaatttaccagcctgtttttcgggcaagctgtagccaagatgtactagcccggaagtcatttctactagcccgacaattcttgatgttttacagtgctcctgttaattaatttcaaagaaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07986 all species →	TBCC	Tubulin binding cofactor C	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039589 all species →	Family	TBCC domain-containing protein 1	Interproscan
IPR016098 all species →	Homologous_superfamily	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal	Interproscan
IPR006599 all species →	Domain	CARP motif	Interproscan
IPR017901 all species →	Domain	C-CAP/cofactor C-like domain	Interproscan
IPR012945 all species →	Domain	Tubulin binding cofactor C-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16052 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031616 all species →	Cellular Component	spindle pole centrosome	Interproscan
GO:0051661 all species →	Biological Process	maintenance of centrosome location	Interproscan
GO:0051684 all species →	Biological Process	maintenance of Golgi location	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16810	TBCCD1; TBCC domain-containing protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.