Gene detail

Detailed information of PcrG018542.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_17:709353...713625
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13088 all species →	BNR_2	BNR repeat-like domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036278 all species →	Homologous_superfamily	Sialidase superfamily	Interproscan
IPR011040 all species →	Domain	Sialidase	Interproscan
IPR026856 all species →	Family	Sialidase family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10628 all species →	SIALIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004308 all species →	Molecular Function	exo-alpha-sialidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006689 all species →	Biological Process	ganglioside catabolic process	Interproscan
GO:0009313 all species →	Biological Process	oligosaccharide catabolic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01186	NEU1; sialidase-1	EC:3.2.1.18	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.