Gene detail

Detailed information of PcrG019197.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_24:478241...491230
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG019197.mRNA1

GTGGACTCCAAGATGGCGGTCGGCGAGTTCTTCTTTACTCCTTTAGTTCTCCTTATTGTTCCAAAACACTGCCACGATGAATTCTTTCTCAACTTTAACTTCTTTCACGTTCCTTGTCTGAAGATTGCAATAAGCAAATGTTTGGGTTACGGCATTGTTGTTGGATCAGCAATGATTAAGATTCCTCAGATAATCAAAATCTTACAAGCGTCAAGTGTGGAAGGTCTGAGCTTGATGTCATTTCTTCTCGAGCTGGTAGCATTGACTGCTACTGTGACATATAGTTTTGCCAAGGCATTCCCTTTCAGTGCTTGGGGTGAAAGTTTGTTCATGTCGATCCAAACCTGCCTTGTCATCATGATGTACTTTTACTATACCAACAAAGCTTTACTTGCCGTCATCTTCCCTTTTTTGTATGGTGGTATCTGTTATGTTCTGGTTTCTGGTCTAACCCCCATGACTGTCTTGGTCCAACTGGCTTCACTTAATGTTGTATTTTTAGGGATTAGTAGGCTCTTGCAGATAGTTGCTAACTTCCGTAATGGCCACACGGGTCAGCTGTCATTCATCATGGTTCTGCTGCTGTTCCTGGGAGCAATGGCACGCATCTTTACAACAATACAAGAGACCGGTGACTCGGTTATGCTGGTGACTTTCCTTGTTTCTACTGCGCTGAATGCAACCCTTACCTTCCAGGTTCTGTACTACTGGAATGTCAAGCCTGAATTGAAGAAGAAGAAGGAAGCTTAGTCATAGCTTGTCTTGTCTTGGGTTACATGTGTTCatattttttaatccttaagctccatttacacaggtggtttttgttgtgcaactcgatgcaatttttgtcgggctttaagttgcaactccagaattgcaagtgtaaaccacctgccattttgtggcagtgatatcgccaaagtttcaaacatgtttgaagctggatgcaactgagctgcataacaaaaattgcTTTTGTAAACAAAGCTTTAAggtgcttatcttctgtcagaactggctggccagaccagtggttttgaatgtgaaatgggattttttcacaatattttcccacaaatccactgcaacagtgtactgtttattcatctgctgatttgaaagtgaaatctgaccaacagcaaaattcCTCCAACCTAATCCTCCAACCTTCCTCTAACCTATGACTGTGAACTCAAAGATCTTGTTTTCTTTTTCAAATGTCTGAACGGTTTTACCGATCTTAATGTGCATGATTTTGTTTCCTTTGTTTCTAATGGCTGAACCGGGCTAAGTACTTCTTATAATCTTCTCATATAATTATGAGTTTTTTTTGCTTTTTCTCATTGGTGGTACCCTGTTTGCACCAACCCTTTTGGGTTAACTAAAGCGGTCaaaataaaaaaaaaataaaaaaataaaaaTTTTGTTCTCAACTTTACTTGTCTGGTGAGCAATTTCTGACAAATGGTAAGTGCCCTTAGTCAAGAAGCACTGGTTTGCTCAGTTGCACAATGCATTTTTCTTTCAAGCAAGTCTTGAAAAGGTTTACAATTTATAACATCTGGGATTGTTGAGTCTATTTGGGATTTTAATTTATTAATCTTCTGAAAGTTAATAGGAATATTCATTTCATTGTTTGATGTCCAATATACCGCCATTCCATTTTGTCTTGTTATCGTTAGAAAGTTTAAATTATTTGGTGATCTCTTGGTGTGTTATTGTGCCTTttaaaagagctacgtatcctttgtgtattttggaaaaattggctaaacttttcaaaatcgtcatttccaatctgtttcaatcttctccaacctcagccatcctagtgcctttttgttttcgaatcatccctttggtgttcttcttccttagcaaacaattgtttttagatttcccaacactttaactgtaatttaggctgttgaagaaatggctcaaaatattgtgacttagctcctttaaTCTGCACACAAAAAAGTCCAAAAAACTTAAAAGGTAtttcctattggacaagtgatcaataaaatccactagcccaacaggaaaatcctctagtctcaggcatttctttgcacattgctgcAACCATTAACTGAGTTGAAACTTCAGCGATTGAACATTATTAATGGGCACAGTAAAAAACTTATTTTTGAGAACCGAGGCACAATTCGCTGTGTTTACATGCATGTATTGTTTCAACTTATCAAGTATGGGCCCTGTTTAGAAAGTGTCATAGTCTTGTTTTGTTAACCTGTCATTTGTTCCAAACTTAGTATATCTTGAGGCATAAAATCGATTGTTTTTCCATTGTTAATAAACTTGATGGTTATTGAGTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04193 all species →	PQ-loop	PQ loop repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006603 all species →	Repeat	PQ-loop repeat	Interproscan
IPR016817 all species →	Family	Mannose-P-dolichol utilization defect 1 protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12226 all species →	MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 LEC35 -RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for PcrG019197.mRNA1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09660	MPDU1; mannose-P-dolichol utilization defect 1	-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.