Gene detail

Detailed information of PcrG020334.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_31:3174774...3196763
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG020334.mRNA1

AGCGTGAAAACATGTGAGTGGCCGGTTACTTTGAGCGGTTTTGTGTGATTATTTTGATATATTGAGAGCAAAACAAGACCGAAATGGACGGATACTCGGTAGCTCAACGAAGGAAAGGAGTAGGGCCAGTGCAATCAACAAAGGGAGGAAGTTCAGAAGATGATTCCCCAGCATTAGCAGACGCCATAAAGATGATAAACAGAGCTATAGACCTCTGTTTTTCAAACAAGTTCCTTCAAGCAAAAGCTGAGCTGGAACCATGGATTAATAAAAGCATGTACCATGCAGTGTCATACAGCAGCGTTGTGTGTATTCAAGCTCTGTTAAAATTTGAACAAGGAGCCATTCAGAAAGCATGTGATAGCGTCAAGCTTGCTGTGAATGTTTGTGAAAGACACAGGAAAAAGCCGACTTGGTCAGAGACATTTTCCAGTTGGATTTGGAATCCTTCTTATGACGAGTTCACTGAAGAGGAAAAGCATGCAGAACTGTGTTATACAGAATGTTTGTTTCTTGATGCTTTGGTCACCTTTATTCAGGACGACAATCTTGTCAGCTTTGTTTGGGGAGCTTTTAAAATCAGGAGCAGTTACCAGAACTATAAGACTTGTCTTGACATGCTGGCAGATGAACCAAGTTTGTCACAGCAGGGTAGTCATGAACAAGACTTTGAAGGAGGTGTTCATTTTGGGATTGGTGGTTTTAATTTGGTGTTGTCTCTCCTTCCACCAATGATCATTAAATTACTGGAGTGGGTTGGATTTTCAGGGGACAGGTTCTTAGGTCTAAATCATTTACACAAGGGAAGCATGGGTCAGAGTTTAAGGTCTCCAATGTGTTCTTTGCTTCTACTTGGCTATCATACCTGGATCACTCAATATTTAGGAAATGGCAATGGTGATGTGGATCACTCACAAGAAATTCTTCAGCCTCTTTTAACAGCATATCCAAAGGGATCTCTATTTCTGTTCTTTGATGGCCGCATTAAGCAAGTTCAAGGAAAACTAGAGGAGGCCATTAGCAGATACAAACACTCTATCACGATTCAGTCGGAGATTAAACAGTTCCATCACATTTTCTATTGGGAACTTGTGTGGTGTTATGCATGCAAGGGGGACTGGGTACAAGCTTACAAGTATGCTGGCATTCTTTTGGAAGAGAGCTTGTGGTCGAAGACTGTTTATATGCATCTCAAAGCTTCTTTTAGAGTGATGACCAGACTTGTAAACATAACCAACACGGACTGCGAAGAAGAGAGAAGGGACACAGAAAGCTACATGTTCAGGCATCTTCCAGATTTTAAGCAGCGTATCGCCGGGCAGACCCTTCCATTCGAAGACTTTGCTATTCATAAGGCAAACAAGTATTTTGAACAAAATGGCCGCCTTTTTCTTCCTGGAGTGGAGCTTATGTACATATGGAATGGCTTTAAAGTCCTCAATCGTAGACCAGACCTTGCTCAATCCCTGATGAAATTAGTGGAGAGTTCCCTACATAAACTGAAGCAAAACAAAGATGACAATAAGAATTACGTAGATGACTTGTGTTTGGGAAAGCTACTGCAAGCAATGTGCTATCGTTGCCTAAACAAGAATAAAGAAGCCATGGAATGTCTGAAGAGTGCCTTTAACCGATCAAAGGAATTAAAACAGGATTTTTACCTCGCCCCTTACACATGCGCAGAGATTGGCTTTCTGTGTTTGGACGAAGGGGACCTGGATCGAGCTAAAGAATACTTGGAACGGGCAAGGAAACATCGGGATCACTTGTTGCAAAGTCTGCTTCACTTGAGAATTCACGCGGCTTTACAAGAGATAGAGCACAGTGGCGCTGCTCTGGACCGGCCAGCTCTATTTTGCGAGAAAGAACACTTACAGAACAAACATGAAAGCGCGAAAAATGAAGACTCAGCAGGGTCGGAAAATGAAGACGATTTTTTCGATGCTGAAGGAGACTTCGTACCGAATTTGTGTCGACATGATTCCAACTCGTCGTTCGATATAATATCGGACTTTTGCGAGGAGGTTTAGCGCGTCACAAAAACTTTTCCTAAAAGAAAGAAAACGTCAGCGTCAGGATTCTCCCCGCTATTTTCCAAAATTTTAAAATATGTATTTATTGAAATATGTACACTATCTATACCAAACATTATAAAAATATATGCTGGTTATACCAGCATTTATTTTTTCGGATGTATATTTTCACACGCCGGTATTTTTATCGTCGTGTTTCTAAAAGAAATATGTACTCCCTTTGTATATTTTATCTACGTGTTAATGTTATCTCTATGATATAATATATCAGACACATAACTGCATAGATTTTTTTTCAAGACAAATAAAATGAAGTGCGAGTTCTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10300 all species →	Iml2-TPR_39	Iml2/Tetratricopeptide repeat protein 39	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019412 all species →	Family	Inclusion body clearance protein Iml2/Tetratricopeptide repeat protein 39	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31859 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG020334.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.