Gene detail

Detailed information of PcrG021141.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_34:8567172...8596748
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG021141.mRNA1

ATGGCGGCGTTGTGCATGCGAAGTGTGTTCCAGAGGCAGCTCGGGCTTGTTCGGCGAGGAATATTTGGCGTACCTAATAGATGGCTACGGCAGTCGTCGGGGAGCTTTACAGAGGAGGAAGGAAAGCATGACACTGGTAATCAAAAAGCCAGTACTGGTGATGAGAATGAGAAGCACTTTGGTGATGAAGAAGCAACCTTTTTCAATGCAGAAGAACAACATGCAGACATGAGAAGAAGTATACTAAATGCTGCACTTGAACATGTCCACGAGTTTGGTTGGAGCTCTGAAGCTATCGAGGCTGGTGCCCAAACTATAGGAGTGTCTGCAATGGCTGAAGGCATGTTTCCACGAGGAGCTGGGGATCTAGTACTTCATTTTACTGAGGACTGCAATGTTAGTCTAGCTGATTACCTGGTATCACAGTCTAGAGTAGACAAGAATACAGCTGCTGCAGAGGAATCTTCTGCAAGCCCAGCACGCAAAAGTTCCCGCATGATAATTCGTGATGCTGTTGAGATACGACTAAGGATGCTCATTCCATACATTGACCAATGGCCACAGGCCATGGGTTTGATGTTATTGCCTCAAAATGCTCCAGATGCTATAAAGAATGTTGCATATATGGTGGATGAAATATGGTACCATGCTGGTGACACTTCAACTGATATAAACTGGTACACAAAAAGAGGAGTGTTAGCAGGCCTGTATGGTTCCACAGAGCTTTACATGGTGAGTGACAGGTCACCTGATTTTGAGGAAACCTGGAGTTTTCTTGACAGAAGGATGTCAGATATTAGTTTGCTGATCAGTGCCAAAGCAACGTTTGAGAAGGCTGGATCAGATGTTGCCGAGCTGTTATCTGCAGCCTTTACCACAGTGCGTAACATAAGTGGTTTGAACAGTCGAAACAGATGAGCAAATGGGTTCAAGATTGGAGATGGCATAGACTCATATACTCAGATGTTCATAAGAAGTCTTCAAAAGAAGTGTTCTTCAACAGTTTAGGTCAAAATGATTTCCACCTAGATTTATGTTGTAATTTTTTACTTAGGTTAATTTGTAAAGAGCTCAGTTCAGTGGTGGTTATGTACTTATTTTGAATGGTTAGCATTTATAAGTACACTGTTGGACAAAATCAGGACAAAAATATATTTAATGTTGAAAACTAAAAGTGATGCCAGTAGCAATATAGCTAGCAAATGATGCTTAGGTTCAACCTAAAACACCAACAGCTGTCTGGATTTAGGCCAAGGTCAAATTGTGTACTATAAAAAACAAAACAAAACAGGGAGCTCATGCAGCATTGATCAAGACATGAATAGCGGTGCTTCAAAGACTAGCCATACAAAACATCAAAATATAAGATGGTATTGCAACATGTATACTGTAAGAGTCCTTTATAATCATTGTCTTTGAATCAAGAAAGATCTAAAGCTAGATCTATTACAATGCACAGCAATACTTAAACAGAAAGACCCACTAGGGGGCTCAAGCATTCTGCTCCATTATAACTGCTCTTTAAAGATTTTCTTTAAAGCTTCAAATAAAGGATACAAAAAATTGTTTTTCATTTTGTTAGTTGATGTAATACTGATGATGGTGTCCAATGGTGGTTAATTTTTTTCCTTGCATAATTTTGCTCCAGTGACTACAAACAATGGTTTCAAGTCAAGGCGTGGACAAAAATATAGTAAACGTATGAATCTCCATGTGAATTGTCCACCCCAGCCTTGACTTAAAACAATTATTTGAGGGCATAAAAGTTGATGCGAGAAAGGTCTATTTGAATGTTGACTGATCTACACCACCAAAATAATTATTTGTTTTCACCTGTACTGATCAAGCTAGTGACTAGAAATTATACAAGGTCTAGCCTGGCCAAATGGCATCCCAACCAGAAGCAGTGCATGCTCAGGGGTTTCATCAAGATTTGCGGAGGGAGGGTATCAGGATGTGGCACCTTATAATTTGGCATATGGGTACCTGTGTTTTGTAAATAAACTTCAATCCTGACTTCAGTTATGGCAAAGTCTTGCTCACATCCAGTCAATTTGCCTGCAATAGCGTGGCCCATAAATGAAACCACTGCAGCCAGGGGTAAGTCTTTGAAATTCAATGTTACCACATAGCAGAACATCATTTTAAGATTTCCTATCCAGCTGCATTACATATTCTTGATTTGGCAAGTGTGAGGTGCATCAACGGAGGGACAGGAAAAAGGGAAGTGCTCGTCACTTTTTTTTTTGTTGATCCCTCCTTCAATTGCCAAATGAATGCATGGCTTAGTGCATGGCAATCTGCCTCCTGTGCCATTAAGTGCAAAATGCAATGACACCTTTGTAGATGTTACAGATTTTTCAAAGGTTTTTCTAGATGGGCTTAGATATTCACGTCAATTTTCAAGAACAATGACTTAAAACATTGATGTCTGCAAGTTATGAAAAATCTACCACAGCTTTATTTAAAGGTATTGCTATATATCCAATAGAATACGTCTTGCAGGTGACTATACTATTAGATGAAAAACAATTTACTATAATTTAACCGTTCTACAATCTTGCCAATACGTGAGTCAGCTATATACATAGTTCTAACAAAGTTTTTGCCATACAAGTTTTCGCAGTCACGTCACAATCCAAGCTTAGTTGTCTATTTAAAATTCTACACTTCAATAATATTATATTGAGCTGCTTTAAATACATTGGACACAATATTTAATTTCTCCACatatatatatatatatatctatatgatacatTTCTCAAATTTTTAATTTCACATATTTCCTAAGTCAATATAATATTATTTCTCTCCAAAACTATGTACTACAATCATATTTAATTAAATAGTTATTCCTCTTTTAATGTATTTAATTTTTGAAAACAAGCTAGGGCAATAAGTTAAATGTTTTTCTCCAATGTGACATCGATGTTCAAATAAACAGAGAATAAACTCATTTTTTTTGTCAGAAAATGAATGGTACCCTGTCTACAGCAAGTATCCTGAATGCTATCCCTGATACCCTGTTTTGGGCGGGCCGAGATAACCAATGCGTagaacattaattttgtactgttacgaatgtcacattcattaaaagtaccatatgcgtctcgtatatcataccaagtaacgaacctcgggggagggggagcttattttgaagggggcgcttattccaaattttaagccttagggtggggcgcttattcgaagctgggcgcttattcaaacatttacagtaTCTATAACAGGAGTACCATTTTGAAATTATGCAAGTTTCTTCTAATATGCACATGGAGTCCAAATTTGGAGACATACCTGAGTATAACCTAATTTAGACAGTGGTTTTTATTAACCTGCCAAATTGCTTTATCAATTTTTTTAGATCCAACATTTAGGGTTAAATTCACTAGTTAAAAATGTCAGACGTCAAATAGTTGAGTGATTTCATTTAACCAGTGAAACAAAATCCAGTGCGCCAACtgagaaattttggtaaacccaccaagccaagaaaattggtcatgacatcagcgtacaacaactgactgactgaccatacagactAGAAACCCAAAGTACTCTATCTGTAGCGGGAGGGGAGTCCTCAGGCCACACACAAGAAATATAAGGCTACTATAGGTTGACCTGCCCATGGGTATGCAGCGTTTGTTTTGAGGTCAACGTCAGCGCTTCCATTGtaatactggacatccatgttatgatcaattgacagctaacaaaacattttaacaaggtatctgctgaccagcacctcattaaggtcatcactgaccatttaatggtttcccactggatcgctgcaggttgaagtactgtattatcaaatgattgagaaagagtataaaatgtggagctccacttttaggcAAACAATTTTGTATCCTACAAAATGTTCAAAAAAACTACAATGTTTCTGTTATAAATATTTCTTTAGCCAATCAGAGTGTACACAACTTAATAAGGCCACTTTCTAAAATACTGTTATTTTAGAAAATAGCCTTCAGTTGTACTCTCTGATACAGTGACTATTATTTTAATTATAATTAACTGCGGTATAATTTCACTAATACAAAGCCCCCTCTTAATTTACCAGGTatagcccactttcaaaaagagtggaaacctggggtgagaggacacgcactcagttatgggatcatttgccctgggtgggggggggggggggggcaaaaagttgaaaacaaatgcacaagtgcccccaaacgatgccataattgaacgtacgcccacccttgccccaggttttcactcttgaaattgaaagtgggctattTGTATTGTATATTCCATGCTGCCTGCAGAGGAATGACtacagtcaactctctcttaacggacactataatgaactctatacgatgagcacctttttaagatggacacctggtgttggtccctgtaattttcc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21392 all species →	COQ9_N	Ubiquinone biosynthesis protein COQ9, N-terminal domain	Domain	Interproscan
PF08511 all species →	COQ9	COQ9	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012762 all species →	Family	Ubiquinone biosynthesis protein COQ9	Interproscan
IPR048674 all species →	Domain	Ubiquinone biosynthesis protein COQ9, HTH domain	Interproscan
IPR013718 all species →	Domain	COQ9, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21427 all species →	UBIQUINONE BIOSYNTHESIS PROTEIN COQ9, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006744 all species →	Biological Process	ubiquinone biosynthetic process	Interproscan
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18587	COQ9; ubiquinone biosynthesis protein COQ9	-	Cofactor metabolism	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.