Gene detail

Detailed information of PcrG021228.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_36:871614...881578
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Alpha-Helix\|UBA · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00889 all species →	EF_TS	Elongation factor TS	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR036402 all species →	Homologous_superfamily	Elongation factor Ts, dimerisation domain superfamily	Interproscan
IPR001816 all species →	Family	Translation elongation factor EFTs/EF1B	Interproscan
IPR018101 all species →	Conserved_site	Translation elongation factor Ts, conserved site	Interproscan
IPR014039 all species →	Domain	Translation elongation factor EFTs/EF1B, dimerisation	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11741 all species →	ELONGATION FACTOR TS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003746 all species →	Molecular Function	translation elongation factor activity	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0006414 all species →	Biological Process	translational elongation	Interproscan
GO:0070125 all species →	Biological Process	mitochondrial translational elongation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02357	tsf, TSFM; elongation factor Ts	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.