Gene detail

Detailed information of PcrG021572.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_4:511086...549329
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG021572.mRNA1

ATGGCGGATAATTCACCTGGCTCGTCACCCTCTATCCGCTCTCAAACTGAACAAGTCTTACCGCAAAAAAAGAACAATGAAAGCGGAGACAGGAAGGGCTCTGAGAAAGAAAGATCACTTAATGCTGTTAGTGCCGCGGCCAGGACAAAGCTCACGCACTTGATCCAACTGGCCAGCGAGGCTGAAGAGCAAACTGATTACAAGAAAGTTGTGGACACTGTTTTTGATTCGCTCGTTGGCGGAGTATTCGACCTCGAAGCGCGCTTCACCATCAAAGATTCATCAGATCTCATAATATTATTGGAGTTGTTAGGGCACTGTAATGTATCGCTAAAGGTTGAAATTTTAGGATTGCTCATTGCAATTTTAAGGAAGAGCATTCCTAACTTGCAAGCAGCCACCAAAATTGGTCTGATTGAAAGAGTATTATGCAGACTTACACAAGAAAGGGAAGTTGTAGCAGACAAGTTGGTGGAGCTTCTTGGCATCTTGTCTGGTTACAGTATCACGGTCAAAGAGCTAAAGACATTGCTTGCCACTTTGAAGGGCGTGAATGGCAAATGGCCGTGCCATACAGTCAAACTGTTGACAGTCTTGAAGCTGATGTTGGAAAAACATGGTCCAAATGTTTACTTCAACTTTTCTGGTCAAGACGGTGGGGCCATCACTTTGCCACCCATTTCAAAATGGCCACTACAGTCAGGGTTCACCTTCTCGACATGGCTGTGTCTTGATACTTCACATCTGGCAAATGCAGAAAAATGCAAACCACACCTTTACTGTTTTCGGACAGGAAAGGGTCTTGGTTATTCAGCACATTTCTCAGGTCCCATGCTGGTCTTAGAGTGTGCGGTCAAAACTGGGAAACGAGAAAACAAAGTTCATCATCATCTTGTTAAGTTTGAATTTCACCCCCAAAAGTGGTACATGGTCACAGTAGTTCATGCATACAACAGATTTCACTCCAGTGAGATCCGATGTTTTGTCAATGGAAAAGTAGTGTCCACTGGTGAAACAACTCTTGTACATGCAAATGAGCCATTCGACAAGTGCTACATTGGCTCATCACCTAAGGCTGATGTACAGAGTGTATTCTGTGGTCAAATGGCAGCAGTTTATGTTTTTTCTGAAGCTCTCAGTGCACAGACGGTTGGTGCCATACACAGACTTGGACCTGGTTATAAGGGCCAGTTTAAGTTTCATGCTGAGATTGACACTCCTTTATCAGAGCAAGACCGAAAGGTGTTGTATGAAGGTCATCTGTCATCTACCATCATGTTCATGTACAGCCCCAAAGCTTGTGATCAGCAGTTATGCCTTGAAGCATCGCCAACAGAGAATCAGTCTTTCTTCTGCCATTCACCGCATGCTCTCATGTTGGAGGGAGTTCAATCTGTTGTCACACATTCTCTTCAAAGTATTCTGCATTCACTAGGTGGAATTCAAATACTGCTGCCACTGTTTGGTCAGTTAGATTTCCCTCAGGAAGGAGCTGAAGACACCAGTGAGGCTCCTGAAGTAGCAATATGTACTGTGCTTCTATCACTTCTGTCTGATCTTCTGCGGAGTTCCTGTACCAGCCAACAACAGATGATTCAATGCCAAGGATTTCTTGTCATCAGCCATGTTTTAGAAATGGCTGTCTCCACTCATTTGACAGAGGATGCATTGAACATTTTACTCTCTCTTGCAAGACATCTTTTAAGTTCAATGGGATCTGGAGCCCTGTTAGGAAGTCTGTTGGATCACATTCTTTTTAATCCAAACTTGTGGGTCAAAGCACTGCCAAAGGTTCAACTACAGTTATTTAGTGTGTTTGCCACAGACCTAGCCACAGGCACAGGCTGTGCTGCTCACCTGCGCCGCGATGTTGGGGTCAGCAGACTTATGTATATGTTAAAGACATTTTACTGGCTTCACGATTCCCCTGAGTTAGAGCAAGACAGCCGAAGGCCATCAAAGGAGGAAATCCATTCTCTAAGGGCATTTTTACTTCTTTTAGTAAAACAGTTAGTTTTAAAGGAAAAAGGCATCACAGAGGAAGAGTTCAAAAGTATCTTGTCCTATCTAATGATAACAAGTGAGGAGGAAAATCTACTGGATGTACTTCAACTGGTGCTGTCAATTATGTCAGAGCAGCCAGACACTTGTATCCCTGTCTTTGACAAAGTGGATGGGTTGAGGGTCTTGTTCCGCTTCCTGGACATGAAAGCTGAAGCAGTTCGAGTGTATTCTTTAAAGATTATTGGCTGTTTTCTACAGTATTGTCCCGCCAAGAGAAAGCAAGACTTACTGGAGCATTACAGTTTGTTCTCACTGGTTGGCGAGAAGCTCATGAAACACTCTCTGACGCTTACAACGTATAATGTTTTATTTGAGATCTTGGTTGGTCGAGTCTCCAAACAGATAGTCAGTGGACACCACCCACAGCCTGATAACAGCTTCCTACTACACAATACAACCATGGCGCCAGTTATCGCCAAAATGCTGCGAAAGAATGAAGGAAAGCATTGCAATGCAGGAGTAAAGCTTACACGACAAGGGAGCTTCAAAGAAGAACGAACCCCAGACGAGGAGAAGATTGATCTCAAAAGAAAATTCCTTTCCGATCTTGTACTGCTTCTTAATCATAACAAAATAAACAGAAGTCTTATCCTGCAGTTGTCATGTTGGCAAGATTGGCTTTTCTCGCTGGCTCATCTGGAACCTTCAAACGCAGAGGAAACCCGCACCACAGACACAGTATTTTGTCTGTTCCGCATGCTGCTGCACCACGCCTTCCAGGAAGAACGAGAAGGCTGGAGGATCTGGGTCGACACTTTGGCTATTCTACATGGCAAGGTAAGTGCGTATGAAAAAGGCAAAGAAAAGCATCACCCTCAACAAGTGGACCTAAATTCTCATGCTGCTGAAAACAACCAGGAACAAGCTAAACCCGGAGCTGCTGAAGTTCATTCTGACAAGAAATCTCCTGCGCCAAAGTCCGCGGATAGCGACACAGACAGAAAGAAATTTTTTCAGTCGTTACTGCAAAGTAAAAATGGACCTAAAGTAGAAACAGCTGTCCCTAACACCATCCCTGAGGAGAGTGAAAGCGAACCTAACTCTCCCCGACATGGGGAATCGCAACCTAACAGCGATCATTCCACTAGTGTTGTGGAAACTGGTGATGGGAATGAGAACATTCACAGTGAATGTAATGGGGACGACAACCCTGAACATGCCGAAGAAAGGTCCGCTAATGAGGAGGACTCGCTTAGCGCCACTGGTGTTAGCTCCGAAGTTAGAGGGGCTGAGGTAGCTGAACAATCAATGGACCAAAGAACGGAATTACCAGACAAAGAGCCTAATTCCGATTCTAATGAAATTGGTGAAAGGCAAGCGGAAACAGCGAATGTCTCGGAGAATAACGTGAAGGATGAAACGGAGGTAGATGAATGTGACCATTCAACGACTTTGTCTTTTTCTGAAACTACGTCAGAAGAGACTGATCAATTAGAGAAAACTGACGATTCACTTGACAAAAAACCAGCAGAACGTCCAATTGAAAGTGAAAGTAAAGAAACCCCGGAAGAGTTGCCCTCTAGTGAAAATAAAAATGGCGAAAGCCCTGAAAATCGGACAGAAAACGATTCAACACCACCAGAACAGGCGATTGAAAATCACGCCAGTTCTAAAGAAGGCAAAGACTTACTTGAAGAAAAAGATAAGCCGAAAGATGTCGACAGCAGTCTTACAATTGCTGTGAAAAGTTCGTATATAGGAGCGCCTTGTGAAACGAGTGAGGAGACGCAATCTAAAGGCGAAGCTACAGAGGTTAGTAGCCAGGAAGAGAAGAACGTGGACCCGTTGGAAAGTGCTTCTAAGAACAAAGATGAAAGCTCGCCTCAATCCGAAGAAAAACCAATAAGTGTTGAGTCATCTCCTGCCAGCTCACCCAGCAAACCGAATCAGCCTGGTTCTCCAAGCAGCGCTTCGCAGACTGGAGCCGAGTCGAGCCCAGGCTCCACTGCTTCGGGTGCAGCCGCAGGCACAATTAACGGCGGCTCGCCTGATGCGAAAGCGACTTACAGGGCGTACGTGAATATTCCGGAGTACTTGTGGTCGCCGATTCATCAGAGATTGTTAGGAGACCTGCTGTTTGCCATTGAGTCTGATGTTCAGGTTTGGAGAAGCCACAATCGTAAAACTGTCATGGATTTCGTCAATTCCAAAGATAATGGAACGTACTTGTGGAACCTGGCACACTTTGTATCAGTGCTGGCAGATAACATCATTTTCTGCTGCGGGGATCTCTTACCCCTCCTGTCATCTGTTACGTCACGTGATTACTGTCAAGACGTCATCGAGCCATGCGGCGGGATGACCCTGGAAACGAGTTTCTCGTTCCTGAATCGCCTGATGTCTCTCGTGGATGTCATAGTATTCACCAGTTCCCTCGCGTTCAGCGGTGTGGAGACTAACAGGAATATGAGCACGGGTGGATTCTTGAGGCAGTGTCTGAGATTAGTGTTTTGCTGTGCAGCCCGTAATCGCCTGGTATGTCGACAGCGTAACAGACCCATCTTACCATTGATAACAAGCGGAAAAATGGGTAAGAAAGCACTGAAGGAAGCCAGGCAAGCCATCAAGACGCTTATAGCGTCTACAAAACCACCCAGTGAACAGGATCTTGTCCAGAACATTCCCGGTCACATGACAACAGTGACCGACCCGGAGAAACTGCTTCAGGAGATGGACGTGAACCGGCTGCGAGCTGTGGTGTACAGGGACTTCGAGGACAGTAGACAGGCACAGTTCTTGGCGTTAACTGTAGTGTACTTCATTGCTGTTATGATGGTCGCCAAGTACAGGGATTTGCTCAAGTCTGAGGACTCCGATGCGCGGGCGAGATATCATACAGTGACCAGTCCAGTTCGTGCTATGTCAGAGGGTGAAGTCCAAGGACTCTCGGATAGCCGATCACGAGCTGCCAGTTGGGGTGGTCAGCGGAGCGCTTCTGCAGAAGTTGAAGATGATGTATTTTCCTGGGACGAGGAATTGTCTATGCCCAGTTTCCTCAAGGGCTCTGTTGACTTCAGTCGATTGAGCTTGTCCGAAAAATTGGAGCTTGGGTTCAAGTCGTCTGGGTCCCTTCTCAAGGAGGTGCTGCTTGACTTTAGTCCTTTTCTGAGTCGGGTCCTTATTGGGAGTCACGGACAGGAGCTGGTGTTGGAGGGTCTTTCTTGTCAAAAGTCGGATTCCATTGTCGAGCTGGTGATGCTTTTGTGCTCGCAAGAGTGGCAGAACTCTTTACAAAGACACGGGGGAATGGCCTTTATGGAGCTCGTCAACGAAGGCAGACTTCTGTCGCATGCCATGCGCGAACGTATTGTCATGACAACCAGCGAGGCCTTTGTGATCGTTAACAAGCTGGACGAGATCTCTCGTCAGAAGCACATGCAGTTTGTTGAGCTGTGCCACTTGACTGAAGCCACGTATAACGAGAACGACAAACTTCAAGACCAACTGCTCCTTGCGACGAAGAGAAGGGATTCCTCAGTCGCCAGAAACGTTATCCAAAAGGTACTTGATATAATCACCAGTGAACAGGGCGCATGGGCAGTGGAACAACAGCCTTCGAATGTGCAGTTTTACCGACTAGACATGTGGGAAGATGATAGTCGACGGCGCATGCGTTTTATCAAGAATGAACATGGCTCAAGTCATCCAGAAGCGACGCTGTTGGAAGGAATAGAGGGAGGAGACCGTAGTTTAACAACCGCCCCTCAACATCTGAACTTCGCCAAAATTTCCTCCGCTAAAGCCGAGGATTCTTACTCACTTGACGAAGAAGAAATCGCCGAAATCATCATTGAAGATCGTAGCCTGGGTCGGGATGTATCTGGTCACGTGGTGTTTACAACGTCCTGCCATCTGATCGCTCCATGCGTATTCGCTCCAGGCTCTCTGACCGTGACATCCGAGGCGCTGTTCTTCACCGTGGACGAGGATAATCCGGAGTATCAGAAACTGGACCCTAAAGTTCTGATGTATATGGACTGTCTGCATGGTAAATGGCCTCTGGATGCAATAAAAGCCGTATTTTCACGAAGATTCCTGTTGCAGAATTGCGCAGTCGAGGTGTATACTTCAACCGGAACGTCTGTGATGTTCAAGTTTGCGGATCAGCAGACCGTGAGGAAAGTGGTACGAGCCCTTCCGCCCGTTGGAGTCGGCACATATTATGGGATACCTCAAACCAGGGCGGCCTCACTATACTCTCCTCGTCAGCTGTTCCAGAAGTCCACCATGACGCAACGATGGCAGAAAGGAGAAGTGTCCAACTTTCAGTATCTCATGTTCCTCAACACCATCGCTGGTCGAAGTTTCTGTGATCTTAATCAGTACCCAGTGTTTCCATGGGTTCTAACTAACTACGAATCTGATGCCCTGGATCTGACGGATCCCAACAATTACAGAGATCTATCCAAGCCCATCGGTGCTTTAAACCCTACAAGACATGCGCAGTTTCTCGAGCGTTACGCGTCCTGGGATGAAAATGACGACATTCCTCCGTTTCACTATGGTACTCACTATTCCACTTCCGGGTTCACATTGGCATGGATGATCCGAGTG

Transcript

PcrG021572.mRNA1

Protein

PcrG021572.mRNA1

MADNSPGSSPSIRSQTEQVLPQKKNNESGDRKGSEKERSLNAVSAAARTKLTHLIQLASEAEEQTDYKKVVDTVFDSLVGGVFDLEARFTIKDSSDLIILLELLGHCNVSLKVEILGLLIAILRKSIPNLQAATKIGLIERVLCRLTQEREVVADKLVELLGILSGYSITVKELKTLLATLKGVNGKWPCHTVKLLTVLKLMLEKHGPNVYFNFSGQDGGAITLPPISKWPLQSGFTFSTWLCLDTSHLANAEKCKPHLYCFRTGKGLGYSAHFSGPMLVLECAVKTGKRENKVHHHLVKFEFHPQKWYMVTVVHAYNRFHSSEIRCFVNGKVVSTGETTLVHANEPFDKCYIGSSPKADVQSVFCGQMAAVYVFSEALSAQTVGAIHRLGPGYKGQFKFHAEIDTPLSEQDRKVLYEGHLSSTIMFMYSPKACDQQLCLEASPTENQSFFCHSPHALMLEGVQSVVTHSLQSILHSLGGIQILLPLFGQLDFPQEGAEDTSEAPEVAICTVLLSLLSDLLRSSCTSQQQMIQCQGFLVISHVLEMAVSTHLTEDALNILLSLARHLLSSMGSGALLGSLLDHILFNPNLWVKALPKVQLQLFSVFATDLATGTGCAAHLRRDVGVSRLMYMLKTFYWLHDSPELEQDSRRPSKEEIHSLRAFLLLLVKQLVLKEKGITEEEFKSILSYLMITSEEENLLDVLQLVLSIMSEQPDTCIPVFDKVDGLRVLFRFLDMKAEAVRVYSLKIIGCFLQYCPAKRKQDLLEHYSLFSLVGEKLMKHSLTLTTYNVLFEILVGRVSKQIVSGHHPQPDNSFLLHNTTMAPVIAKMLRKNEGKHCNAGVKLTRQGSFKEERTPDEEKIDLKRKFLSDLVLLLNHNKINRSLILQLSCWQDWLFSLAHLEPSNAEETRTTDTVFCLFRMLLHHAFQEEREGWRIWVDTLAILHGKVSAYEKGKEKHHPQQVDLNSHAAENNQEQAKPGAAEVHSDKKSPAPKSADSDTDRKKFFQSLLQSKNGPKVETAVPNTIPEESESEPNSPRHGESQPNSDHSTSVVETGDGNENIHSECNGDDNPEHAEERSANEEDSLSATGVSSEVRGAEVAEQSMDQRTELPDKEPNSDSNEIGERQAETANVSENNVKDETEVDECDHSTTLSFSETTSEETDQLEKTDDSLDKKPAERPIESESKETPEELPSSENKNGESPENRTENDSTPPEQAIENHASSKEGKDLLEEKDKPKDVDSSLTIAVKSSYIGAPCETSEETQSKGEATEVSSQEEKNVDPLESASKNKDESSPQSEEKPISVESSPASSPSKPNQPGSPSSASQTGAESSPGSTASGAAAGTINGGSPDAKATYRAYVNIPEYLWSPIHQRLLGDLLFAIESDVQVWRSHNRKTVMDFVNSKDNGTYLWNLAHFVSVLADNIIFCCGDLLPLLSSVTSRDYCQDVIEPCGGMTLETSFSFLNRLMSLVDVIVFTSSLAFSGVETNRNMSTGGFLRQCLRLVFCCAARNRLVCRQRNRPILPLITSGKMGKKALKEARQAIKTLIASTKPPSEQDLVQNIPGHMTTVTDPEKLLQEMDVNRLRAVVYRDFEDSRQAQFLALTVVYFIAVMMVAKYRDLLKSEDSDARARYHTVTSPVRAMSEGEVQGLSDSRSRAASWGGQRSASAEVEDDVFSWDEELSMPSFLKGSVDFSRLSLSEKLELGFKSSGSLLKEVLLDFSPFLSRVLIGSHGQELVLEGLSCQKSDSIVELVMLLCSQEWQNSLQRHGGMAFMELVNEGRLLSHAMRERIVMTTSEAFVIVNKLDEISRQKHMQFVELCHLTEATYNENDKLQDQLLLATKRRDSSVARNVIQKVLDIITSEQGAWAVEQQPSNVQFYRLDMWEDDSRRRMRFIKNEHGSSHPEATLLEGIEGGDRSLTTAPQHLNFAKISSAKAEDSYSLDEEEIAEIIIEDRSLGRDVSGHVVFTTSCHLIAPCVFAPGSLTVTSEALFFTVDEDNPEYQKLDPKVLMYMDCLHGKWPLDAIKAVFSRRFLLQNCAVEVYTSTGTSVMFKFADQQTVRKVVRALPPVGVGTYYGIPQTRAASLYSPRQLFQKSTMTQRWQKGEVSNFQYLMFLNTIAGRSFCDLNQYPVFPWVLTNYESDALDLTDPNNYRDLSKPIGALNPTRHAQFLERYASWDENDDIPPFHYGTHYSTSGFTLAWMIRV

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06469 all species →	DUF1088	Neurobeachin-like, DUF1088	Domain	Interproscan
PF14844 all species →	PH_BEACH	PH domain associated with Beige/BEACH	Domain	Interproscan
PF02138 all species →	Beach	Beige/BEACH domain	Family	Interproscan
PF20425 all species →	Neurobeachin	Neurobeachin alpha solenoid region	Repeat	Interproscan
PF15787 all species →	DUF4704	Neurobeachin/BDCP, DUF4704 alpha solenoid region	Repeat	Interproscan
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010508 all species →	Domain	Neurobeachin-like, DUF1088	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR023362 all species →	Domain	PH-BEACH domain	Interproscan
IPR000409 all species →	Domain	BEACH domain	Interproscan
IPR036372 all species →	Homologous_superfamily	BEACH domain superfamily	Interproscan
IPR050865 all species →	Family	BEACH Domain-Containing	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR046852 all species →	Domain	Neurobeachin, alpha-solenoid region	Interproscan
IPR031570 all species →	Domain	Neurobeachin/BDCP, DUF4704	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13743 all species →	BEIGE/BEACH-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008104 all species →	Biological Process	protein localization	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG021572.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.