Gene detail

Detailed information of PcrG021646.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_4:2827003...2849899
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG021646.mRNA1

TTTCACGGTTCGTGCGCGCGCTTTGTGAAGGGCACACGCTTTATTTGTTATTCAGCTTTAGACAAATTGCTCAACACCATGAGTTGCCCTTACGCTCACGACAGCGCCGGTGAGGGGAGTGCAAACGTGAAACTGCCTGGCGATGAGAAGCGAATGAACTACGGCGAATATCTACAGCTGAACACACTTCTTGACTGTCAGAAGCCAGCGAGCACCAAATTTGGTGAGGCAACTGTCCATGATGAGCTTCTCTTCATTGTCACACACCAAGCATATGAACTTTGGTTCAAACAGATTATTCACGAGCTGGACTCTATCAAAGATATGTTTACACTTGAGGAACTGGGAATAGATGAAAGGAAGATGCTTGTTTTGATCTCAAGACTGGGTCGCATTGTGCAGATTCAAAAACTGTTGCGTGATCAGATCATGATTTTGGAAACGATGACTCCACTCGATTTTATGGAATTCAGAGATTACTTGGCCCCTGCATCTGGATTTCAGAGTCTTCAGTTCAGGCTTATTGAAAATAAATTAGGAATTAATAAGACTCACAGGATACGCTACAATTATCAAGATTACAGTAAAGCATTTGACTCCCAAGATGGAAAGCAACTGGAGGAATCTGAAAGCACACCCTCTCTGCTACAGCTAGTCCAGAGGTGGTTGGAGAGAACTCCTGGTCTTGAAGAGAATGGATTTGATTTTTGGAGGAAATACAAGAGAAGTGTTCAAACGATGCTGCAAACTCAGAAGGCCGAGGCCGAGGCTTTTGAAGATGAAGAAGTGAGGGCTACTTTGTTAAAGGAAGTCAAGAAACAAGAGGATCATTTCCAAACGATCTTCAGCGAGGAGAGGCACAACCAACTTGTTGCTCGAGGCGAAAGAAGATTCTCTCACAAAGCCATGCAAGGGGCACTGATGATTTACTTTTATCGTGACGAGCCTCGATTTAACCAACCGTTTCAAATTCTTCAACTGCTAATGGATATCGACTCGAATTTGATCAAGTGGCGATACAATCATTTGATGATGGTTCAGCGGATGATTGGCAGTAAAATGGGCACTGGTGGCACGTCTGGGTACCAGTACCTCAGATCCACGGTCAGTGATCGTTACAAGGTATTTGTGGACCTGTTTAATCTGTCCAACTTTTTGATACCACGTGACCAAATCCCGCCGCTCAGCTCGTCCATGAAGGTGCGCCTGCGCACTGCGCTGGTAGAAGGTCGGCTGTACGACAGTGACAGTGCTCACTTCAGCGACAGCAGTGAAGAGGATCAGGTGTCAGCGCTCACCTCCCTTGTCAAAAACACCGTCATAACGGCATCACCAACTGTCGACAACGACAGACACGAAGAAGCCAGTAACTCCCCGGTAATTAGTTGAGCTTGTAAAATTTTAATCATGCTTCACATGTCGACAAGGGAAGTTTGAGTTTAATTTTTTTTTGTTACAAAATTAAGGGGCATGCGGCCATTTGCCGAAACACACTTCTGTGACTTAGATAAAATTCGATTTTGGAGATCCATTTTGTCAATGACGCAAATTTGTCGACACTTCCTTGACTTTTTTTGATTGGTTAACTGATTCTTTTCTTTCATTGCCTATTAAAGGTGGTTTTGACTAGTAAGATCAGTTCGTGTCGACAGTAACGTAAATTCATGTTTTTTGTTTAATTATTTTGCACAATATTTTGCAATGGACTGTGCACGACTTTTGAAACAACATTTGCAGTGTTTTCATCATCAAACCTTGTTTCTTTTTTGATATTTCATTTTTTGTTGTAATCATTTGTTAAAAGATGGAATAGTTTGTAAAATACGTAGAGATTTATAAGTAATTCTCGGTAAGAGACATTAAGCATTTTTGCTGACAAGAACGGTTACAACGATCAGGTGTACTATTTAAACTCAAGAATAACTGCTTGACATTCAACAGTGAAGTTATTTGGAATTTGCAAACAAAATTTGTATTTTTTTTTCTTCAAATTGTAGTGGTAGAATTCCGATATGTCGAACGGCAAGCGAGCAATAAACCGATAAAAACATTGATGGAAACGACTTTTGATTCCAGAAATTGTGGGCACAAGAAAACGGAATACGACTGTTAGTAATTCTCGGTAAGGGACGTTAacagcgcgacacgccttcgtgtagtcatccgacaaacttctttgacaactttaattaagcgaatcagagagcgcaaatttctttcaccggcaacatcctttcaaagtcaaaagacatctcaatgaaactgttgaatcgcatttgtaaataaagttgtggtattttcggcacaatacagagctaactaacttctgaaaaaagtttgttggatggctataccaaggcgcgtcgcgctgtTAAAGTAAGCGTATTGTATCGTTTCTTTTGGCACGTCTTTCTGTTCGCTTTCCAGACGTTTGAGCCAATCACAGGACTGACATCTCATCACGTGACTTTTCTGTATGCAAAGCAGCCTTGTTTGATTGGCCAAGTTTATTGAAAGCCAACAAGAAGTCTAGATGCAAAAATCATTTATAAACCATTTGCAACATTTTGTATTTAAAACCATATTTTCAATGTAGAAGCATTTTGCTGGTATAAGGTGACAAAGAATTTAGTGTACTATTTAAATTCAAGAATATAACTATTTGACATTCTAAGATATTTAAGAATGAATAAAAGATCTCGCTTTTGGACAATGCT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03301 all species →	Trp_dioxygenase	Tryptophan 2,3-dioxygenase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004981 all species →	Family	Tryptophan 2,3-dioxygenase	Interproscan
IPR037217 all species →	Homologous_superfamily	Tryptophan/Indoleamine 2,3-dioxygenase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10138 all species →	TRYPTOPHAN 2,3-DIOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004833 all species →	Molecular Function	tryptophan 2,3-dioxygenase activity	Interproscan
GO:0019441 all species →	Biological Process	tryptophan catabolic process to kynurenine	Interproscan
GO:0019442 all species →	Biological Process	tryptophan catabolic process to acetyl-CoA	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00453	TDO2, kynA; tryptophan 2,3-dioxygenase	EC:1.13.11.11	Tryptophan metabolism	ko00380	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.