Gene detail

Detailed information of PcrG021733.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_40:299774...308482
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG021733.mRNA1

TTTGCCTACATGCCGGGAATGCTGATGTATTATATTTTCTCTTAGCCTACGACGCTATCAGGTAAAATACTTGAGTTTTTGTGAGCAAAAAAGAAATATAGTAGTGATGTCCTGGAATACCATTCGTCCCTCGCAGGAACAGGAATACTGCCGAGGGATCTCAGTACAGTAGCCAGAGTAGCGAGATTGTGACATCTCCGTGAGTAAATGACATGACAACCTCCTCGATGTTGAAAAGATACTTCTTTAAAAGTCTTCCTACAACACATACACCATACATATCAACGGCCCACAACCCTAATTTGCTGAAAAAATGTTTCCAGTCAACCATGAAGTTTACTTCAACTCACGACTACGTTATTTGTGGAGCAGGATCTGCAGGCTGTGTTCTTGCAAACCGTCTGTCAGCAAACCCTGAAAACAAAGTTCTTCTACTTGAGGCAGGGCCTAAAGACTGGACGTGGAAGATCCACATGCCGGCTGCTCTTATTTACAATCTGTGTGATAAGAAGTACAACTGGTATTACGAGACAGAACCGCAAGAGTTTATGGATAATAGACGGTTGTACCAGCCAAGAGGAAAAGTCTGGGGTGGATCGTCATCACTGAATGGCATGGTGTACGTAAGAGGTCATGCTTATGATTACGATCGCTGGGAGAAGGAAGGTGCTGAAGGCTGGTCATATGCTGACTGTTTGCCTTACTTTAGGAAATCGCAGACACATGAATTAGGTCCAGATGATTACCGAGGTGGTGACGGTCCTCTCCATGTATCACGCGGCAAGTCAAACAATCCTCTATACCAAGCGTTTATTGACGCAGGCGTTGAAGCTGGCCATCCCTTCACAGAAGACATGAATGGCTATCAACAAGAGGGATTTGGTTGGATGGACATGACAATCCACAAAGGAGTACGATGGAACACAGCAAATGCTTACCTCAGACCCGCACTGAAACGTAAAAACCTGAAAGCAAACACACGTGCAATGATCACAAAGATTGTGTTTGAAGGCAGCCGTGCTGTGGGTGTCGGGTACATCTTAGGGAATCAATGGAAACGGGCCGAAGCCAGAAAAGGCGTTATTTTATCTGCTGGAACCATTAACACACCACAGATATTAAATTTGTCTGGTATTGGAAATGCTGATGACTTGAAGAAGCTTGGTATCCCTGTGAAGGTTCATCTTCTTGGTGTGGGACAAAACTTCCAGGATCATTTAGAAATGTATTTTCACCAGGAATGTACTCCTATTACTTCAAGCTTACATCGCTCACTCAACTGGTGGAACATGATTCCCATAGGAGTCAAGTGGTTCCTCACCAGATCGGGCCCGTGCGCCACTAACCATCTTGAAGCCGGCGGTTTCATCCGCAGCAAGGACAGCATCCCTCATCCTAATATCCAGTACCACTTCCTACCTGCTGCTTTTAAAGACCACGGAAGGGTGGCTGTGGAGGTGGACGCCTTTCAAGTGCATGTTGGCTCACTACGGTCTACAAGTCGTGGATATGTGAAGCTAAAGTCTTTGGACCCATATGATTATCCCGTTATCAACCCCAACTACCTGTCCACTGAAGAAGATAGAGTAGAATTGAGGGATTCCATTAAGCTTACCCGTGAGATTTTCAAGCAGAAGGCTTTGGATCCGTTTCGTAAAAAGGAACTACAGCCAGGTGAACATGTTCAAACTGATGACCAAATAGACGCTTGGGTTCGACAAAATGCTCAAACTGCTTACCATTTAGCATGTACGTGCAAGATGGGTGCTGAAGATGACCCGATGGCTGTAGTCAATAACAAAACGGAAGTCTTCGGAGTGGAAAATCTGAGGATTATTGACGCTTCGATCATGCCGAGCATTGTGAGTGGAAATATTAATGGACCAACCATTATGATCGCAGAGAAGGCAGCTGATATCATATTAGGAAATCCACCCCTGCCCAAATCAAATGCACCAGTGTACAAGACGCCAGAAAAGGGACCGAGATAGGTCATTGCATTGTACGCCGCGGCTGAAATTGAAATACTGTTGTATGTGTAAAGAGGATGCCGTTGTGAGGGTCTTTTGAGATTTGGAATACGGATAACGAACAGTTGTACAATTTAGAACATGTAAAAAAAAAACGCCTTTTTATACTTTAGCCAAGAAACCTAAAAAGATTGCGTTGCAAAATCTTCGAAAACTACAAGCATTCCCGTCTTGTCTCTATTTCTTTGCAAAATATTACCCAACTTTGCGAAAACTTTCCCACTCACTCCCCTCTGTTCCCATGGTTCCTACCGGTGCTTGTAACTGAAAAGCTAAGCTATTCCGCTATCTGAACTGAAAGGATGTCCCTTTAACGTCAACAAATGAGACTGAAATTGATACTATTTGAAAATCTACCTCTAATAAGGTTGCTAATTACCCGGTAATTAGCGGTAAGCCTCGCGATAAGTTTAAGGTGACCTGATAAAACGTTTTATCAGAAAATATTTAAGGAATCCGGTAGGAACATAGCGATTATGATCGACGCAAATTACGAAACGTCAAAAAGTTGCTGTCATAACCGGCCCGAGGAAGTTACGTCACTGAGGAAGCTCATCTGCATGATGAGCATTTATGCAAACAATCACTGTTTAGTGAGAAGTAGTGTAACAACGCTTTATTCGGAATAATAAAATTTGAGAATGGACCTTTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00732 all species →	GMC_oxred_N	GMC oxidoreductase	Domain	Interproscan
PF05199 all species →	GMC_oxred_C	GMC oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012132 all species →	Family	Glucose-methanol-choline oxidoreductase	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR000172 all species →	Domain	Glucose-methanol-choline oxidoreductase, N-terminal	Interproscan
IPR007867 all species →	Domain	Glucose-methanol-choline oxidoreductase, C-terminal	Interproscan
IPR011533 all species →	Family	Oxygen-dependent choline dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11552 all species →	GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0016614 all species →	Molecular Function	oxidoreductase activity, acting on CH-OH group of donors	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0008812 all species →	Molecular Function	choline dehydrogenase activity	Interproscan
GO:0019285 all species →	Biological Process	glycine betaine biosynthetic process from choline	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00108	betA, CHDH; choline dehydrogenase	EC:1.1.99.1	Glycine, serine and threonine metabolism	ko00260	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.