Gene detail

Detailed information of PcrG021966.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_42:1874760...1885091
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG021966.mRNA1

GTCACAGATCAATCCGGCGGCAGAATATTTCACTCATTTACAAACCTTCTTGCTGTCGCTAAACAATCTTATAATGCAGCAGTATTTCTGCAGGATCGAGGCTGATGATGTGCAGTATTATCTTCTCACGGAGTTATTCGATGAAGGCAAAAATGGCTTTGATCTCACTATTAGCAATGGTGAACAAGTTTGGCGCGAATCAGCTGATTCCAGTAAAATTGCATCAATGGCAAAGAAAGTAGAGATGAGTGTGACTGAATTTGCTAATGAGACATGCAGAGCACTGACAGGACAGGCAACAAGTCAAGATAATTTTGTGTACCAAGTCAAGCCTCAAGGATCAAGTCTACAGTTTTTATGGAAGAAACATATTGGAGATGGTGTTAAGTTTCAGCTGGGATGGTTGACTTTGTCAAAAGTTAATGATAGTGTCACTGTGATGAAGAACATATTTGACCTGGCAGTGGACCAAATGGCAGAGCTCAAGCAAGAAATATCATCACTGAGATCTGACAATGCCAGACTTTCTTCAGAGAGGAAAGATGCTTTGAAGCTTCTTGATAAGTGTGTAACAGCCAAAGAAGAAATGGAGAAAGATTTGTTTGAAAAGTTTGCAGCTGTGCTAAATGACAAGAAGAGCAAGATTAGGCAATTAAAGGAAATGGTCAATGAGGCAGCTGCTGCAGAACCTGTACGAGGGAATAAAATGCCAGTCTCACCAAACCAAAACAAGGCAAACTCCAAAGAAAAACCAAGCAGGCAAGAAGATTCAGGTGATGACACTGACATTGAAAAAATGGCACCAGATGACTCACCTGTTACAGACTCTACAAAGGCAAATGAACAGAAATCCATTGCTACAGCTTTTAGTCACTCACTGTTACCTGAAGAGGAAAATGAAGAAATTGAACCTACATTTAAGAGACGGCGTCGACGAGATCCAAAGCCAAAGGAATCGCCAGCAGCCAAGCTTGTTTTACCCAAGGTACCCTCTGTAAGGAAGACACCTAGCAGCTCATCAGGGGAGAGTTCGACTTCATCTCGACCTCGCCTCCGGCAAAGAGGTTCGGACAAGTCCCTACCAGATGCTGACGATTTAATGGCTGAGATGGAAATGTGAAACAAAAACCCTACGTTTATTACATGACTTGTGAAAAGTGCCTCGTTTTAACAAAGGATGTACATTGTGCCTGGAATTTTGTAACAAAAGTGAATTGAGAACAGTTTGATTGCGGCAAAACAATGCGAACCAAGGATAGAAAATCAGAGCAAGTGTCATGAAAAGATCGCAGAAAGTGCAAAATTTCGCAAAACGCGTGTTCGCGCGTGTCGCGAGACACGAGAGTCCAGTCAGAGCGAGTCACGTGAGTGACAGATCATTGTTCAAGCTCCTTAGTGAGCCCGTTGATAGGAACATCCCGTCTTTAGGAATTCTCTGGGCCCGCGAGTTTGTGTCTTTGACGTTGCTAAGCAGCGTGACGTCACCTCATTGCGCCATGATGGTGTGAATGTTTTCGAAATACCCATGGGAGCGCTTGCTATTAACGGATTTGAACGAAGATTTACCTGTACTCCTATCATTCTCACGACTACACAGTAGAGTAATGCAAaaatggtcttactctccatgagttctcttagcccagtagaaaaggtgcccgcccgggactccgggagcttattggtccaagttccgtagggcactcacttttcctcgtgtcacgttagttattacatctttcaccacaggtagcccaggctcgaaatgtgagcgttggcatggctgcgtaaccttcgaaatacaaggatttgtatggggaaaataacgattctttGCGAACCGgtaccattaaaactaataaaatggccatagattggctcgaagaccacacagtagaggaaaaaatactgaactaaagtaaggtaagccgatttttattgaaatcgctccattttcataggttacaaaaacattcgttattttccccgtacaaatccttatatttcgaaggttatgcaaccatgccgactctcacattttgaacttgggctaCCTGTGCTTTCACAATCTAAAAACGATTTTTCCTTCTCAGCGTAACTGAGAATCTTTAGTGCGCGCTGAAAAATAATCAGAAAGAGGCGAAGTTAGAGGAGAAGTATTTCACAGAAGCCTGGTTGTTCTTTGTTTTAGCAACATTCTCAAGTTTTGGTAAAGTTTATGGAAGTGTGCATTAACAATTATAGATTAGATACAGGCAGAAATAATTTATTAAGTCAAGAGATCTTCTGTAATATACCTTTTTATTCTAAAAAGATTACATGTAAACTGTTTTTACTCAATTAAGAAAGAACCGTCGCTCTTGTTCATACGTTCGGCAACATGTACAGGTAAAAATATCTCGGCTTCTTCTTGGAAAAGTTATACTTCAGTCTAGTACAATAAAAGTTCTATAACGACCTTATCTCCTCTCGGTCTCCATAACCCATACATCCCAGCCTTCCTatatttatttcgtaaacttagcctaaaatctaaaatgaataATGTTAAtttgccgtgaaacaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06632 all species →	XRCC4	DNA double-strand break repair and V(D)J recombination protein XRCC4	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014751 all species →	Homologous_superfamily	DNA repair protein XRCC4-like, C-terminal	Interproscan
IPR010585 all species →	Family	DNA repair protein XRCC4	Interproscan
IPR009089 all species →	Homologous_superfamily	XRCC4, N-terminal domain superfamily	Interproscan
IPR038051 all species →	Homologous_superfamily	XRCC4-like, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28559 all species →	DNA REPAIR PROTEIN XRCC4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0005958 all species →	Cellular Component	DNA-dependent protein kinase-DNA ligase 4 complex	Interproscan
GO:0006303 all species →	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0010165 all species →	Biological Process	response to X-ray	Interproscan
GO:0032807 all species →	Cellular Component	DNA ligase IV complex	Interproscan
GO:0051103 all species →	Biological Process	DNA ligation involved in DNA repair	Interproscan
GO:0051351 all species →	Biological Process	positive regulation of ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10886	XRCC4; DNA-repair protein XRCC4	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.