Gene detail

Detailed information of PcrG022575.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_48:1837912...1844690
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG022575.mRNA1

ATGGCATCAGAAACTGTAACAAAGGGTTCTAAGCGGTTAAAATTATCGCCGAACTCCGATCAACAACGAGACGAGATGGAAATTGATGATGATGAAAGAAATTGTACAAAGCGCCAGGGTCAATCGCTTGACACGAACTTGGACGAGAAAGGGATTGAACAGGAGAAACCAATGCCACCAAAGAAAGACAGTGAGCTAGTTGTAATATCATCTTCCTCATCTGACGAAGACTCTGACAAGGAGCTAAAGAAAGACACAAGTGAGTCAGTTGTGAAAAACGAAAAAGACAAAATGGACACCTCACCTGACGTGGAGAAAAAAGAATTGCAACCAAATTCAACTGAGTTAAGTGAACAAAAGCCTAAAGCAGAAGAACCTGTTTTAAAACAACAAGCAGACAGCAAAGATTCAGACTCTGATGAATGCATCTCGCAAGAAGATCTGCTAGCACAGCTGGGTTTGAGCTCTGTTAAAGAGCTGAACAAAAAGGAGATGGCAACAGACCTAAGCGCACCATCTGCTAATGCAAATGGCATTGAGAAAAAACCTGTGATATCTCACAGGGCAAGGGAGAGTATTGTTGAGTTCTTGAAAGTACCAAAACTGACCTCGTTAGAAAGTAAGAAAAAAGTGAACGGAGAGACAAAAGGTGATGTTGCTATCACCAATGGTGATACCAGTGACGGCTCACGGCCTGATTCACCTCTTTCTGATGAAAATGACGATGACCTGCAGGCTAAAGAAAAATTGATTGCGCACCTAAGGAATGAACTTAGACAAGAGGAAGCTAAGCTTCTCTTGTTAAAGAAGTTACATGCTGCACAAAATGACGTCAAAGGCAACTCAAAGCTGCAGAAGGAAAATGTTGTTGAGAAAGCACCAGCACTGTCAGCTACTCCACAGAGTAACCCGTCGGTGAAATCCACCATGCAGCTGCCAAGTAAAAAGGGGCAGAACCTTCCTCCACCACCGCCATTGAAAGCGTCAACAGTGTTGGCATCCTCTACGTTTCACCCACCAAGAGACGTAGCAGGACAACCAAGGCTGCTGCCAAAGGGAAGCAGTACTGCCCAAGCACAGTCTTCAAATACTGGTTCATCCAAGTTTGTAGGTTCTGCAGCGCAGACTCTGAAGGAGTTTGCTGTGCAACAGCAGTCCCTACATCAACAGTCCAACCAACCTCCCTCAAAACCTGGGTCTTCTGCGATTGCTGACCTGCAGAATGTTGTCACATGCATGGCAAACCTAATTCAGCCCACTCCACTCTACCCTGGAGGCAGAGGCAGTCCAGTATATTCAGCAGCTAATCAGCCCGCCCCGGTTCGCCCTACTCCTGTCAGAGCAAATAATGTCAGTAGCCTCCCAGCTAGTAGTGGATATGTGTCATTTCAACATCATTTGCCGAGCAGCCCCCATCAGCAAAGTACTGGTGGGAAGCAAGCAGCAGCCAAAATGGCATTGCGGAAGCAGTTGGAGAGAACCCTGCTTCAGATTCCCCCTCCCAAGCCACCACCACCTGAATGGTCATTCATTCCCAGCCTTGGCAGCCCAGATTTTATGGTTTTGGTTGGGCTGGAATCCGTTGTAGATGTCATGGCTGCCAGAGAAGCTAAAGGTAAACAGAACATTCCATTGCAAGAGCAAACCACAAATCCCAAAGTTTGTTCACGCTGCAACACTGATTTCTCACCTTCATGGACCAGTAAACAAGATGGTGACTCAGGACTGGTGACTGTGTGTGAGAAGTGTAGCACTGTTAATGTAAAGAAAGAGCTCAAAGCGGAACACACTGCTCGTTTGAAGGCAGCATTCCTAAAAGCTCTTAAGCAGGAGCAGGAGATAGAGCAAAAGATTAACGACACCCCTCCGATTGCCCCTAAGCCGCATCACCAAAGCCAAAAGTCGTCTCCCCAGCCACAGCTAGCCCCTGCACCCCCACGccatcacatcgcacatcaccagcccatcatgcatcaccatcaccagcccgttcaaccagggctatatcatcatcaccagccccacaccaACTCTCTTCTGTTCCAACTGCAGCAGCAGCACCTACAACAACAACACCAAGAGTTGGAGGCAGCGGCACGACAGCAAGCTGATGTGAGATGGCACCCTTACTTAAGTCAGCACCACCACTCTGGATCCCGTAACCCACAGCATCATCACAGCTATGTATCGGACTCTGATAGACAGTATTTGTTGGACATGATTCCTTCTTTGCCAACACCAACTCTTGGTTATGGTTCTAGTAGGATCTAG

Transcript

PcrG022575.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16563 all species →	P66_CC	Coiled-coil and interaction region of P66A and P66B with MBD2	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032346 all species →	Domain	Transcriptional repressor p66, coiled-coil MBD2-interaction domain	Interproscan
IPR040386 all species →	Family	Transcriptional repressor p66	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13455 all species →	TRANSCRIPTIONAL REPRESSOR P66-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0016581 all species →	Cellular Component	NuRD complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23194	GATAD2; transcriptional repressor p66	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.