Gene detail

Detailed information of PcrG022675.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_49:1562867...1590859
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG022675.mRNA1

ATGGCGCGAATGAAATATCCTGGAACTAACAAGGCCCGATGTGTGCCCGAGAAAAAGAAGAATTTAGACATGTCCAAACGGATGAAGACAGAGCAGTTAGGCCAAAAGCTAAAGAGTTCAGTAATTAAGCCTGTTTCCATCAGCCTTCGAAGATATCGCGAAATATTCGGAGATTCCGATGAAGAGGAAGAAGAATTTTACGGCTTTAGAGCGGAGGATTTGGGTCTGAAGGCGTATCGATCGTTTTCTGTACAAGGCTATCTGGATGGCAGCGAGAGAGTGAGTTATCGAAAAGATGGCGCCCGAGATCGACAATCGCGATATTCCGTTGGTAATTCGGCTAGCGTGCCCACAGCTGAATCCCCTCAGAGTAAAAATAACACCAAGGAAAGGGAAAACAAGGTATCTGCCACTTCCCCGAGCCAAAACGTCTACGCTAAACAGTACAGAAAAAGAGATTCGTACGAAAGACGGTTCGCGCGACCCGTTGAGCTTCAATTCGATAAAGCTTGTCTGTCACCGAATGTGAAATCAACAACCCAAGTCAGGGCGAATTTTGTACCGCGCGTCCAGAAACCTGTTCAGCGAGAGGGCAGCAATCGTCAGTTCCCGGCTAACCCAAATGAGGTCAATTTGTTTCCTCAAAATAAACGAAAAGCTGTGCCTCTGGCAAAACAGTTGTTAGCAAAGGCGAAGGAGGGACAGCGAATTCGTAAGCAAAAGAAATTGGACGCGGTAAACAACGACAACCAACAAGTGCGACAATCGCGGTTTGGACGAGTTGTAAAAAGTAAAAAGCTAGATTACGAAGATGTTACGTCGCCAAAATATAAAGGAAGGGGCGACGAGACGAAAGCTGGACGATCGAATAACCGAGCAGGGCGCAAAAGGCGTTTAGAAGATGGCGAATTTCCCCCTAACAAAACCCTTCGATTGGCAGAGGTGAAGATAGAAAAAATGGAGCTGCCAGGCGATCAACGAGTCTACGTGAATAATCCAGAATCACCCACAGGATTTGATATCCAGCCTCTCAGTGCTACTGAAGTTAAGACATCTAAATTTGGATTTATGGATATGTCACATCAGCATTCTTCCACAAATATGACACCACAGCCTTCCTCTCCTATCAGAAAAGTCCGTATTAAAAATGCAACGAGAATAAAAAATGTCACAAACACAAAGAATCATTATCAACAGGCAAAATTCCCTGGACGTGGGCAGAAGGCCCAAAATATCAGAACTTCCAATTCATCACAGGCCTCACGGCTTGATGGAGCTTTTAAATCAGACAAAGATATAAAGAAATCTGAAAGGATAAAAATTAGGAAAAGGACTAAGGAATTGCTTGTAGTCAAACGCAGGAAAGAAGACCTGGAGGATCAAGGTAGTGATGCCTCGTCAATTTCAGAGGCTTCGACTGCAGGGAGTGATGCTTCTAATAGGAAAACGCCCAGCTCAGCTAACAGATATGTGTTTAAATCAAAACGATTGCAAGAGTTGCAAGAGAAAATGGACAATGAAACAACGACAGATGTTGAAATACAAGATGAGTCTGCTTTAAGTGAAATTAGAAGAAATTCTAAAGATCAGAAGACAGAAGAAGGTGAAATTTGTGGAGGTTCAGAAAGTGAAAGGAACAGTCGTCCAACGTCAAGAAGACCGAGCCAAGAACAAGTTGTGAATGACGCAGATGACGTCCAAGATTCTGACAGACCAGCGGCAGTGAAAAAGAAAAGAGTTAGTGTGAAAAAGACTTCATTATCTAGGCTGCAAGCTGTTAGAAATGATGATGACATACCGAGTTCAAGTGAGGATGAGGACAGCTGTAAGCCACTGTCGCAAGTCAAGAAAGAACAGCAGAAAGAACAGCAAGAACCTGCTGACAGAGTGGTGAAAAAAGTTATCAAGGTTGTAAAGAAAATACGAACAAAAAGTGGTGAAACCAAAACAAAAGTTGTGAAAATCATCAAGAAGATTGGTGTGCGAAAGAAGGGAAAGGGCAGCTGTCCTGTAGTTACAGGAAGGAGGCGGAGTCGCTGCGGCAACTGTAGAGGGTGTAGAATCACAGATGATTGTGGTGAATGTCGCTGGTGCAAAGACAAGCCAAAGTTTGGGGGACCAGGCACTAGCAAGCAGTCATGTGTGAAACGCAAGTGTGTCAATCCTCAACCTCCAAAAATAGGGGATGAACGTGTCAAGAAAGCCAAAAAAGCTGAAAAAGCTGAATCTAGTGTGCCAGCGAAGAAGAAGCTTCCACCAAAAAGTGAGCTTACACTTAAGGTGAAAAACTCTAAGAAAAGTCAAAACCAGTTGCCGTCCTCTACAAAGAAACCTGCTGATAAAGTGAAGCCTACACCTGTTGGCAAAAGACAAGCACTACAGGACAACAGACCACTGGTCAAACTTCCTTGGAGTGACAACAGTACTGAGGAGGAAATCTGGAAGGAAGGATTTGCAGTTTGTTTTACAGCTGGTGTGCCTGATGTAGTAAAAGAACTCTGTTTCCTCTGTGGCAGCAAGGGAGAGGAAAAGATGTTCTACTGTAGAGTCTGCGCAGAGCCTTTCCATGGGTTTTGTCTTGATGAGGAGCCAGTAGATGAAAGTACATGGTGTTGCGACAATTGCAGTAGTTGTAGTGTTTGTGGATATCAAGACAAGCTTTTAATGTGTGATCGTTGCCAGCGTGGTTATCATGTAGAATGCCTGGGTCCATTTTACCCAACAGAGCCTGAGGGCGAAGATGATGTATGGGTTTGTGGTCGATGTGTTCAGTGTAAGAATTGTGGAAGGAAAACTGCTGGAGATGATCCCGAGGCACTATGGATGCTCGAGTTTACACACTGTCAAGACTGTGGCCGCCAGAGGGAACAAAACAACTTCTGTCCACTTTGCAACAAGTGTTACTCTGATGACGACTTTGATTCTAAAATGGTTCATTGCGTCAAGTGCGACCACTGGGTACATGCCGAGTGTCAGGGCATAACTGTTGATCAGTATGAGTGCTTGGCCGATTTGCCAGAGGAGGTACAGTTTGTTTGCCGGCAGTGTTGTGAGGATCAGTTGACTTCACCTTGGTATAAAGAACTCATGGAAGAAATGGAGGCTGGATATGAACGGGTTGTGGATGAGATAAAATCTTGCCAGGCTTATGGACAATTCATCTCTTACTTTGAGCAGCTTCAAGTTGACAATGGATACCCTAAAGATCTGGATGCAATTATGACAAAAGTGAAAGAACAAAAGTACATCACTGTGGAAAGTTTTTGTGAAGAGGTGACCAAGTGTTTGGACAGAGTGTTTAGACTTGTCTCATCAGATGTTGAACTGACAAAACATTGGGGATCTCTTTATGTAATATTTTGTAAGGAGCTTGCATCAATGTTTCCTTGGCATAAAATCAAGAATAATGAAATTTCTGAGGAGAAAGATGAGGAAAGACAACTGTGCTCTCCCAATGGAATAATCGGACACAGAATTTCCTATGAGGTGTGGGATCATTCATACGTCTCCTTAAAGAGCAGCCAAGAAAGCTCTGATACTCAACCAGAAAGAAAAACCTCATCACCATCAGATACCTCACAGCAGGAGACAAATGCTGAAGAAGAAAAGATGGAAACAGATAATGAGCAAGATCAGCCAAAAGAACAAGTCGCTAATGAGGAACCCATGGAAACTGAAAACAATGTTGCTGAAGAACAACCCAAGCCAGTAGACATGGAGGATACCAGGAAGTGTCTTCTGTGTGGTTTAATGAGAGACGCTGATCCCCCCGGAGCTGGTCGTCTTCTCAGTTGTGGGTTGGACGAGTGGGTCCATGTCAACTGTGGTCTGTGGTCTGCTGAAGTGTTTGAAGACGACGAAGGTCGTTTACAGAATGTACAAGTGGCTATTTCCAGAGGCAAACAAATGAAATGTGAACATTGTGGTGAAGTTGGAGCCACTGTTGGCTGCTGTGAGCCCCGCTGTCCCATGAATTTTCACTTCATGTGTGCAAGAAATGCAAAAGCAGAGTTTCAAGATGACAAGAAGGTGTTCTGTGCTACACATTCCTTTAGGACCAAAAAACATCTGCTGATGGAAAATGATGACTTCTGTGTTGAGCGCCGTGTTTGTGTGGACATGAGTAAAATACGAGCGACAAAGAAACTTTCAAGAGGATTTGAAGCTCACTCTATCAACCTTGTACAAGGTTCTCTTACTGTGGAAAACATTGGTAAACTGAGTGAATATTCAGACACCAAACAAACGCTATATCCGATTGGTTACAGAACAAGTCGGCTGTACTGGAGTGTAAAGGATCCAACGAAAAGATGCCGTTATCACTGCAAGGTGGAAGAGAAGAAAGTTAAATCTTTGCAAAAGAAATCGCAGCACGAAGTCAAGGAATTAATTGATCAACAACATTTACACAAAGTTATTTCTCACGAGGAAGTTAACAAAAAGGAAAAAACAGCGAAAAACATTTCTTCAACTCACGGAGATACAAAGAACATGGTGCCTCCTCGAAACAACATATCACCTGATTATTTGAACAGTTCTTATGGAAAGAAACTTAAAAGAATTGCTCCTCATCCGGGCCCTTCATTAATAAATCACACTGTATTTCCGGGAGTTCTCTTCAAGGACTCAAATTTAGGACCGCCTAGCGCACATTTATCTAAACTGAGAAGAATTCTTCCAGCTCCTCAAAAACCTTTACCTACGTCTCCTGCGAACTCTCCAAGAAAACTCATCGAGCACTTAAACCGTCAGACAAATCATTTGCCCGCCATGATAAATCCTGTTTATGTTGAAAAATCGTCACCAGTCCCTAAGGACCCCTCTCCGCCAAAGGCTGCCCCTACTAGAAGTAGAAAAACGCCGCCCGCAGCGAAAAGAACAATTAGTTTTGAGGAGACTATTCCTCAGACTGTGAGACAGTTAAACTGCGACAATGAAGTGGTAGCAAAATCGAGTGGCGACGAATTAAATTCTCCTGTGAAAGAAAAACCTACCAAGTCTTGGTTATTAAATCGTCGAGAGAGAGAAAACGCTTTAAAAGGCGAGGAACTTTGTGTGTCGTTTGTAATAACAAGTGACGAAGGAATTAGGATTGAGGCGGATACATGTGAAGGTGCATGGAAGCAAGTTTTTGATCTGGTACAAGAAGCGAGGATAGACCGTCTTATGAAGCTGGTTCCCTTCGCAGGTGTGAATGGCAAAGCGATGTTTGGAGTGCAACAGGAATCTGTTGTTTCCATGTTAGAACAGCTGCCAGGAGCTCATCAACTTAAGCAGTACTCGTTTAAATACAACCCACCATTCGACAAGGATAGCCTTGAGGACGAAACACAGGCTTTAAAAGAGAATCCGCATGGCTGTGCAAGAGCTGAGGTGTTTGACAGAACCAAAAAGTACGACATGTTCGCCTTCTTGGCTTCTGTTCACCGCGTGGCTCCGCAGTTGGAAGAAAGTACGGAGGAGCAGGAGAACTCAGAACAGACGCGAGATGGACTGCTCACTGTCAAGCGTCCAACATGTCTTGATCTTCCAATGGCCATGAGGTACCGCCACCTTAAACAATGTTCCTTCAACAAAGATGCTGTTGCTGTATACAGGTCACCGATTCATGGGCGTGGCTTGTTTTGTACTCGAAATATTGCCGCTGGTGAGATGGTGATCGAGTACTCTGGAATGCTGGTTCGTTCAGTTCTCACTGACAAGCGAGAAAAGTATTACGAGAGCAAGGGAATCGGTTGTTACATGTTTCGTGTTGACGGTACCTACGTTGTTGATGCAACCATGTGTGGAAACGCAGCGCGCTTCATCAATCATTCTTGCGAGTCGAACTGCTATTCTCGTGTCATTACTGTGGATGGACAAAAGAAAATTATCATCTTCGCCTCCAGAAGCATCTCAAGGGGAGAAGAGCTAACTTACGATTACAAGTTCCCTATTGAAGACGAGAAGTTGGCTTGTCTCTGTGGCTCCAAGCATTGCCGCAAATATCTCAATTAA

Transcript

PcrG022675.mRNA1

Protein

PcrG022675.mRNA1

MARMKYPGTNKARCVPEKKKNLDMSKRMKTEQLGQKLKSSVIKPVSISLRRYREIFGDSDEEEEEFYGFRAEDLGLKAYRSFSVQGYLDGSERVSYRKDGARDRQSRYSVGNSASVPTAESPQSKNNTKERENKVSATSPSQNVYAKQYRKRDSYERRFARPVELQFDKACLSPNVKSTTQVRANFVPRVQKPVQREGSNRQFPANPNEVNLFPQNKRKAVPLAKQLLAKAKEGQRIRKQKKLDAVNNDNQQVRQSRFGRVVKSKKLDYEDVTSPKYKGRGDETKAGRSNNRAGRKRRLEDGEFPPNKTLRLAEVKIEKMELPGDQRVYVNNPESPTGFDIQPLSATEVKTSKFGFMDMSHQHSSTNMTPQPSSPIRKVRIKNATRIKNVTNTKNHYQQAKFPGRGQKAQNIRTSNSSQASRLDGAFKSDKDIKKSERIKIRKRTKELLVVKRRKEDLEDQGSDASSISEASTAGSDASNRKTPSSANRYVFKSKRLQELQEKMDNETTTDVEIQDESALSEIRRNSKDQKTEEGEICGGSESERNSRPTSRRPSQEQVVNDADDVQDSDRPAAVKKKRVSVKKTSLSRLQAVRNDDDIPSSSEDEDSCKPLSQVKKEQQKEQQEPADRVVKKVIKVVKKIRTKSGETKTKVVKIIKKIGVRKKGKGSCPVVTGRRRSRCGNCRGCRITDDCGECRWCKDKPKFGGPGTSKQSCVKRKCVNPQPPKIGDERVKKAKKAEKAESSVPAKKKLPPKSELTLKVKNSKKSQNQLPSSTKKPADKVKPTPVGKRQALQDNRPLVKLPWSDNSTEEEIWKEGFAVCFTAGVPDVVKELCFLCGSKGEEKMFYCRVCAEPFHGFCLDEEPVDESTWCCDNCSSCSVCGYQDKLLMCDRCQRGYHVECLGPFYPTEPEGEDDVWVCGRCVQCKNCGRKTAGDDPEALWMLEFTHCQDCGRQREQNNFCPLCNKCYSDDDFDSKMVHCVKCDHWVHAECQGITVDQYECLADLPEEVQFVCRQCCEDQLTSPWYKELMEEMEAGYERVVDEIKSCQAYGQFISYFEQLQVDNGYPKDLDAIMTKVKEQKYITVESFCEEVTKCLDRVFRLVSSDVELTKHWGSLYVIFCKELASMFPWHKIKNNEISEEKDEERQLCSPNGIIGHRISYEVWDHSYVSLKSSQESSDTQPERKTSSPSDTSQQETNAEEEKMETDNEQDQPKEQVANEEPMETENNVAEEQPKPVDMEDTRKCLLCGLMRDADPPGAGRLLSCGLDEWVHVNCGLWSAEVFEDDEGRLQNVQVAISRGKQMKCEHCGEVGATVGCCEPRCPMNFHFMCARNAKAEFQDDKKVFCATHSFRTKKHLLMENDDFCVERRVCVDMSKIRATKKLSRGFEAHSINLVQGSLTVENIGKLSEYSDTKQTLYPIGYRTSRLYWSVKDPTKRCRYHCKVEEKKVKSLQKKSQHEVKELIDQQHLHKVISHEEVNKKEKTAKNISSTHGDTKNMVPPRNNISPDYLNSSYGKKLKRIAPHPGPSLINHTVFPGVLFKDSNLGPPSAHLSKLRRILPAPQKPLPTSPANSPRKLIEHLNRQTNHLPAMINPVYVEKSSPVPKDPSPPKAAPTRSRKTPPAAKRTISFEETIPQTVRQLNCDNEVVAKSSGDELNSPVKEKPTKSWLLNRRERENALKGEELCVSFVITSDEGIRIEADTCEGAWKQVFDLVQEARIDRLMKLVPFAGVNGKAMFGVQQESVVSMLEQLPGAHQLKQYSFKYNPPFDKDSLEDETQALKENPHGCARAEVFDRTKKYDMFAFLASVHRVAPQLEESTEEQENSEQTRDGLLTVKRPTCLDLPMAMRYRHLKQCSFNKDAVAVYRSPIHGRGLFCTRNIAAGEMVIEYSGMLVRSVLTDKREKYYESKGIGCYMFRVDGTYVVDATMCGNAARFINHSCESNCYSRVITVDGQKKIIIFASRSISRGEELTYDYKFPIEDEKLACLCGSKHCRKYLN

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05965 all species →	FYRC	F/Y rich C-terminus	Family	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF02008 all species →	zf-CXXC	CXXC zinc finger domain	Domain	Interproscan
PF00856 all species →	SET	SET domain	Family	Interproscan
PF13771 all species →	zf-HC5HC2H	PHD-like zinc-binding domain	Domain	Interproscan
PF05964 all species →	FYRN	F/Y-rich N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001214 all species →	Domain	SET domain	Interproscan
IPR003616 all species →	Domain	Post-SET domain	Interproscan
IPR034732 all species →	Domain	Extended PHD (ePHD) domain	Interproscan
IPR003889 all species →	Conserved_site	FY-rich, C-terminal	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR002857 all species →	Domain	Zinc finger, CXXC-type	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR003888 all species →	Conserved_site	FY-rich, N-terminal	Interproscan
IPR047219 all species →	Domain	Histone-lysine N-methyltransferase 2A/2B, SET domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45838 all species →	HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0035097 all species →	Cellular Component	histone methyltransferase complex	Interproscan
GO:0042800 all species →	Molecular Function	histone H3K4 methyltransferase activity	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0051568 all species →	Biological Process	obsolete histone H3-K4 methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14959	MLL4; [histone H3]-lysine4 N-trimethyltransferase MLL4	EC:2.1.1.354	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.