Gene detail

Detailed information of PcrG022702.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_5:181791...193585
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG022702.mRNA1

ATGATGTCGAGAGAATATCGGCCCCGAGCGGGCTCGAAGAATTATGATGTGGCGATCGACCCTCATGTGCAGGAGTTTTATCATTCGCAAATTGAAGATATCGAAATCCAAGATCATCGCCAGGTTAATGTTGGAGTACATATTCCCATACGCCAAAGAAAACACCACCACCACGGGCAAAGACAACACCATCATCGGCGAAGGCACAGATCCCTCACTCTCGAATCAAGAGAGGACCCGTCAGATACTGAAAATACATCTGCATTACCAACCGACAAAGTACGCTTCATTCTTGGTGGGGAAGAAAATGACAGAAGACAGCATAAAATGTTCACAGAGTTGGCGGCGTATAATTGTGACAAGGAAGGCAATGAAGAGTGGAGGGAAATGGCACGGTGGCTTAAGTTTGAAGAGGCTGTTGAAGAAGGTGGAGATCGGTGGAGTAAACCACATGTCGGCACGTTGTCTCTGTACAGTTTGTTTGAACTGCGTAGTGCACTTCTACGTGGAACAGTACTTTTGGACATGAATGCAAGTAATTTACCTCAAATCGCAGATCTTGTTCTTGATGATATGGTGAACAAAAATCATTTGGAGCAAGACATCAGACTGAAAGTTCGCGATGCGCTCTTGAAGAAGAAGCGTCACCAAGGAGTCAAAACTTCAAAAAAGAAATCGTCCGGCCCTATGAGTAGCTTTGGATCATTTGCTAAAAAAGCCTCGTCAGCTGGGTTAAGTGAGATGTTAAAACGGTCAGACTCCTCTCAAAAAACAACAGCTCCCAAGACTTTAGAAGTAGTGGCAGAAGACAAGACTGATGGGGAATTCCCCCATTTGCCGTCAGCTGTAGACTTGGTGGGGAAAGAGAGAGAAAGCGGAGCAAATGGTGACATCAAGAGGGCAGATTCTGATCCTGGGCTAGAAACGTTTGATGCCAACTTCATGAAAAAGATTCCTGAAGGGGCAGAAGCTTCCAATGTCCTTATTGGAGAGCTGGATTACTTGAAGAGGCCTGTGACAGCATTTGTGCGTCTCGAGAACGCATCTCTACTGGGTGACCTCACTGAAGTGCCCGTGCCCAGCCGCTTTATCTTTTTCATGTTAGGACCACCTGGTACTCCAGGCCGATACTATGAAGTCGGGCGTGCTATAGGGACACTTCTGTCAGATGAGGTTTTCCATGAAGTTGCCTACAAAGCCCAATGCCGTGAAGATTTGTTGGCAGGAATTGATGAGTTCCTAATGCAGGTAACAGTTTTGCCACCTGGTGAATGGGACCCTTCGATTCGTATTGAGCCTCCTGATGCCATCCCTGAACAGGGAAAGCGTCTGGAGTCTTGTAAATCTGGGCCTGGGGGCAATGGAGATGAGGAGGAACACGACCCAGCAGGCGACAGGGAAGAGCAGCTTCAAAAGACAGGAAGGTTGTGTGGTGGTCTCATTGCTGATATCAGACGCCGGGCTCGTTGGTACTACAGTGATTTTAAAGATGCTCTCAACCCTCAGTGCATCGCATCAATCATCTTCATCTACTTTGCATGTCTTACACCAATAATTACTTTTGGAGGTTTAATGGGGACAAAGACAGGAAAGAACATGGCTGCAATGGAACAAATTCTGGCTGGAGGAATTGGTGGAGTTCTTTTCTCTCTGTTTGGTGGTCAGCCTCTTATTATTCTAGGTGCAACAGGGCCTATGTTAGTGTTTGAAGAAATTCTGTATTCATTTTGTGATAAATTCGGCCTTGATTATCTTCCGTTCCGGTTGTGGATTGGAATTTGGACCATGTTATACTGCTTTATTCTGGTGATAACTGATGCCAGTGCACTTGTGAGATACTTCACCCGCTTCACTGAGGAATCCTTTGCCACGCTTATTGCACTGATCTTTATTGTCGAGGGTTTCAAAAAGTTAGTCCATGTTCTGCATGATAGCCCAATTCCGACAACAAGTGCTGACTTTAGACGTTACGGTTACATGGCGATCCGCATTCAACCCATGCACCATCCAACACATCAATCAATGCTACAACTGTAG

Transcript

PcrG022702.mRNA1

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000857 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00955 all species →	HCO3_cotransp	HCO3- transporter family	Family	Interproscan
PF07565 all species →	Band_3_cyto	Band 3 cytoplasmic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011531 all species →	Domain	Bicarbonate transporter-like, transmembrane domain	Interproscan
IPR013769 all species →	Domain	Band 3 cytoplasmic domain	Interproscan
IPR003020 all species →	Family	Bicarbonate transporter, eukaryotic	Interproscan
IPR016152 all species →	Homologous_superfamily	Phosphotransferase/anion transporter	Interproscan
IPR003024 all species →	Family	Sodium bicarbonate cotransporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11453 all species →	ANION EXCHANGE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006820 all species →	Biological Process	monoatomic anion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0008509 all species →	Molecular Function	monoatomic anion transmembrane transporter activity	Interproscan
GO:0005452 all species →	Molecular Function	solute:inorganic anion antiporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008510 all species →	Molecular Function	sodium:bicarbonate symporter activity	Interproscan
GO:0015701 all species →	Biological Process	bicarbonate transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0050801 all species →	Biological Process	monoatomic ion homeostasis	Interproscan
GO:0051453 all species →	Biological Process	regulation of intracellular pH	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG022702.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.