Gene detail

Detailed information of PcrG023922.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_61:839339...862923
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG023922.mRNA1

ATGGAGTATTGTGGCGAGGTAATGAACTACAAAGATTTTCAGGAACGAGCAGAGAGATATGACAGAGAGAACAGGAGACATTATTACTTCATGACTTTGAGAGCAGATGAGATAATCGATGCCACTTTCAAAGGGAATTTATCTCGCTTTATCAACCATAGTTGTGACTCTAACTGTGAAACTCAAAAGTGGACTGTCAATGGCTTGCTTAGGATTGGATTCTTCACTCAAAGATTTATCCCTGCTGGAACAGAGCTGACATTTGATTACAAACTGCAGCGTTATGGGAAAGTTGCTCAGGTGTGCTACTGTGAGGCACCAAATTGTCGTGGTTTTATTGGAGGTGAAAAACAAACACCCCTGAAGAACACTGTGGAAAGAATAGCAACTCCACCCATAACAAGCTCACCGAGGAGGAGGCGTAAAAAGCAGAGGAACTTGACCAGCGAGTTTGATGATATAACACTGGAAGATGAGGTAGAGAAGCTCCTAGGTGACCAAAGAGGCTTGGTGAACAGTGACCAGGCATTGAAGTTGTCAAGATTGATGGTTCGAGCAGAGACCACAGATCAGAGAATCATGCTGCTTAAAATCCTGCAGCACACTACAGATCAGTCATGTTTGAAGAGATTTCTAAAATTTCAGGGTTTGTCGCTTCTATGGAGTTGGATGGTAGATGGTTTAGGAAAGAGAATGAAACTTAAGATGGAGTTGCTTGACACATTGAGACACCTTCCAATTGCCACTAAGAACCAGCTCGAAGACAGTAAAGTGATAAAGGTCGTCAGAAAATGGGCATTATCATCCTGTCCAACAGTTGAAGCTGGGTCTAGCAGTGGTCAAGAATCGCACGGTAACAGCCCAGCAGATTCTGAATGTACTGCAGGAACTGAAGACAATGACGATGATGGCCAACAGGCAACAAAAGTTCTTGAAAGCAGCAAGAAATTGGGTTGTAGCCCACTTCTTTTTGAAAGGCAGTGTTCTAATAAGGACCAATCAGACGATGATTCTTTAGATGCTGAAGTTGCTAGCTTTAATGTTGACAAGTCGGCAGATGGAGTCATGAAAACCAAGATAGGGACAGATATTTTTGAAAAATCTCCAGATGACTTTTCAGAGGATGACGTTAAGTCTGAGGATGAGCCCCTGCCCGAAGCAGGAGTTGGACTGATGGCTAATGAGCTGTTGAAGTCCTGGAGTCTACTCAAGGAAGTGTACAGAATACCAAAGAAATCTGCTACTCCAGCTAAGCAGGACCGTATCGTTGAACTATCAACAGTGGTATACAGCCCAGCAGGAAGCACTGATGGAGACCATTCTAGGACTCCAGTTGATCACATCAGTTCTCCAGGGAAATTGGATGCCATCATGAAGAGTCTTCAGAACTCTCCTAAGCCTCTCTTCCCTCTAGAGTCGAGGACCCCACCTGCCTCTCAGGGATTCTCCACCTGTAGTGAAGACACTGATGTTGAGAAAAGCTCAACAAATGAACCTGCTCCAGCAAAAGCTGGGGACTTCAGCTCATTAGAGTTTGAAGATGACGCTGAGACCAAAGAAAGCACCACTCCTGATAAAGAGGATGTCAGTCATCCTATACCATCCTTGTCAGATGCTGTCAATGTGCCGCAAAATCAAGATGTTAGATCACAGAACACCGTACAGACATTTGGATATCAGCAGCGCATGAATTTCAATGTGGAGCATGGGTTTGGCCCAAGCCCTCAAAAGCCTAGCCGCAACAAAAAGAAAAAGAAGAAATGGACTCAAGCACAGAATTTTAATTTTCAACAGCAAGGGAGGAACATTCAAGGTCCGCTAGATAACAACTTTGGAAATTTCAACATGAACCCACAAACAAACTTTGGACCACAACAAAACATGAACCAGTGGAGAGGCCCATCTCAAAATACACCTCCAAACTACCAAGGGAACCAGTTTTATTGTGGTGGACCTACCATAGGACAAGATCAAGGGCCCAGACCCCAACATATTAGCACTTTTGTTGGAAGTTTCACCCCTCAAGGCCCCTCATTACCAAACTTTAATGTTCCTCCCCCGAACATCCCTCCAATGGAATTTTTCCGAAAAGTACCACCACCAAACTTTCAACAACATAATCAGCCTATGATGCCTCAGCAGCCGCAACAGACTCCGCACATTCCGCCACATTCAGTTCCGCCTCCTCCACTTCAGGGTAACCAATCGCAGTTCTTCTCTCCATCTCAACCACCACCTTACACTCGGCTTCCTCCCCCGCCCCCTTTCCAAGCAAATGTGTCCACTCCCCCACCAGCACAGTTTCCGCAGCCCAATACCATGCAGCAGCAACAGCTTCCAGCACGGAACATGCAACCTGGCTTCCCTCCACAGCAAAATCAGTATTCGTACAACTCGCCACCGCCACAGCTAAGTGTCCCACCAGCTCAGCAGATAAGTCCTGCTGGAAAACTTCCAATACCTTTACAGCATCATTCTAGTTTGCCTGAGGCAGTTACGCATCCAGAAGGGGCATCATTCTCTCATCAAACTGACGCTGTGACAACGTCCTCAACAGCGACCTACGAAAGCGGTGAAGGCTTTGCAGGAGAACCAGAGCCTTGTACGCCATCTCCCTTAAAGCATAAACCCACACAACTACCACAACACTGGAAGTCGGCAACAGACCAACAGGGAAAAGTTTATTACTACCATGCATTAACAAGAAAAACACAGTGGGATCTTCCAAGCTGGGACAGCAGTCCATCATCAGAAGAGGAACATCATGTTATAGAGCCTGAAGAGACAAGTGTCCTAGCCCACACTTATACCAAAGCAGAAGAGGAATCACCTTCAAAAGCAAAAGTAAAGAAAATGATCAAGACCCCATCAACTCCCCCAGGGACCCCCCCTGAGAGCCCCACCCTGGCATATACTACAGCTGCGGCAGATACCACTGCGCACCAGCGAGAGGAACACATGCATATGGACGAATCATCTGGCAGCTCATCATCACGCCATAAAATCAGGGAATTGTTTAGAATGAAGCTTTCCAATGTGGTTGTGAACTGTCTTAATCCTTTCTTCAAAGTCGACTGTAAATCAGGCAGGATCCTGACTACAGAAGACTTCAAGTTTTTAGCTAGAAAGCTAACACATGGAATTTTGATGAAGGAGCTTAGTCACTTAAAAGATGAAGAAACATTGCAGTGCAATGACTCTGTAAAAATCAAGACTAAAGAATATATTCGAAGTTATATGAAAAAGTTTGGTCCTGTGTATAAACGATCTTAG

Transcript

PcrG023922.mRNA1

GTCTAACTGTAActggtaattcaatttagtaaacaatgtcggatttgctcatgtttactgggaaaccaaatctttaaaataattatttctacagattctacattttattactaagctttacagtgatataaaggtttcattaaagtgacaggtatacgaatgattttctgttagacactcctgaaggtctacagtTATACATGTACTGTATTTACCAATGTCCAGCTTTCAACTTACTGTTTTGTATTAATTTTTTTCAACAGTAACAGCAGATGTGCCTGCGGGGAGTTATGTAGCAACAAGAGATTTCAACAGGGGTGTAAAGTAAAAGTTGAAGTTGTTAAAACTGAAAAGAAAGGCTGGGGTTTAAGAACTCTTGAAGATCTTGGGTCAAACCAATTTGTTATGGAGTATTGTGGCGAGGTAATGAACTACAAAGATTTTCAGGAACGAGCAGAGAGATATGACAGAGAGAACAGGAGACATTATTACTTCATGACTTTGAGAGCAGATGAGATAATCGATGCCACTTTCAAAGGGAATTTATCTCGCTTTATCAACCATAGTTGTGACTCTAACTGTGAAACTCAAAAGTGGACTGTCAATGGCTTGCTTAGGATTGGATTCTTCACTCAAAGATTTATCCCTGCTGGAACAGAGCTGACATTTGATTACAAACTGCAGCGTTATGGGAAAGTTGCTCAGGTGTGCTACTGTGAGGCACCAAATTGTCGTGGTTTTATTGGAGGTGAAAAACAAACACCCCTGAAGAACACTGTGGAAAGAATAGCAACTCCACCCATAACAAGCTCACCGAGGAGGAGGCGTAAAAAGCAGAGGAACTTGACCAGCGAGTTTGATGATATAACACTGGAAGATGAGGTAGAGAAGCTCCTAGGTGACCAAAGAGGCTTGGTGAACAGTGACCAGGCATTGAAGTTGTCAAGATTGATGGTTCGAGCAGAGACCACAGATCAGAGAATCATGCTGCTTAAAATCCTGCAGCACACTACAGATCAGTCATGTTTGAAGAGATTTCTAAAATTTCAGGGTTTGTCGCTTCTATGGAGTTGGATGGTAGATGGTTTAGGAAAGAGAATGAAACTTAAGATGGAGTTGCTTGACACATTGAGACACCTTCCAATTGCCACTAAGAACCAGCTCGAAGACAGTAAAGTGATAAAGGTCGTCAGAAAATGGGCATTATCATCCTGTCCAACAGTTGAAGCTGGGTCTAGCAGTGGTCAAGAATCGCACGGTAACAGCCCAGCAGATTCTGAATGTACTGCAGGAACTGAAGACAATGACGATGATGGCCAACAGGCAACAAAAGTTCTTGAAAGCAGCAAGAAATTGGGTTGTAGCCCACTTCTTTTTGAAAGGCAGTGTTCTAATAAGGACCAATCAGACGATGATTCTTTAGATGCTGAAGTTGCTAGCTTTAATGTTGACAAGTCGGCAGATGGAGTCATGAAAACCAAGATAGGGACAGATATTTTTGAAAAATCTCCAGATGACTTTTCAGAGGATGACGTTAAGTCTGAGGATGAGCCCCTGCCCGAAGCAGGAGTTGGACTGATGGCTAATGAGCTGTTGAAGTCCTGGAGTCTACTCAAGGAAGTGTACAGAATACCAAAGAAATCTGCTACTCCAGCTAAGCAGGACCGTATCGTTGAACTATCAACAGTGGTATACAGCCCAGCAGGAAGCACTGATGGAGACCATTCTAGGACTCCAGTTGATCACATCAGTTCTCCAGGGAAATTGGATGCCATCATGAAGAGTCTTCAGAACTCTCCTAAGCCTCTCTTCCCTCTAGAGTCGAGGACCCCACCTGCCTCTCAGGGATTCTCCACCTGTAGTGAAGACACTGATGTTGAGAAAAGCTCAACAAATGAACCTGCTCCAGCAAAAGCTGGGGACTTCAGCTCATTAGAGTTTGAAGATGACGCTGAGACCAAAGAAAGCACCACTCCTGATAAAGAGGATGTCAGTCATCCTATACCATCCTTGTCAGATGCTGTCAATGTGCCGCAAAATCAAGATGTTAGATCACAGAACACCGTACAGACATTTGGATATCAGCAGCGCATGAATTTCAATGTGGAGCATGGGTTTGGCCCAAGCCCTCAAAAGCCTAGCCGCAACAAAAAGAAAAAGAAGAAATGGACTCAAGCACAGAATTTTAATTTTCAACAGCAAGGGAGGAACATTCAAGGTCCGCTAGATAACAACTTTGGAAATTTCAACATGAACCCACAAACAAACTTTGGACCACAACAAAACATGAACCAGTGGAGAGGCCCATCTCAAAATACACCTCCAAACTACCAAGGGAACCAGTTTTATTGTGGTGGACCTACCATAGGACAAGATCAAGGGCCCAGACCCCAACATATTAGCACTTTTGTTGGAAGTTTCACCCCTCAAGGCCCCTCATTACCAAACTTTAATGTTCCTCCCCCGAACATCCCTCCAATGGAATTTTTCCGAAAAGTACCACCACCAAACTTTCAACAACATAATCAGCCTATGATGCCTCAGCAGCCGCAACAGACTCCGCACATTCCGCCACATTCAGTTCCGCCTCCTCCACTTCAGGGTAACCAATCGCAGTTCTTCTCTCCATCTCAACCACCACCTTACACTCGGCTTCCTCCCCCGCCCCCTTTCCAAGCAAATGTGTCCACTCCCCCACCAGCACAGTTTCCGCAGCCCAATACCATGCAGCAGCAACAGCTTCCAGCACGGAACATGCAACCTGGCTTCCCTCCACAGCAAAATCAGTATTCGTACAACTCGCCACCGCCACAGCTAAGTGTCCCACCAGCTCAGCAGATAAGTCCTGCTGGAAAACTTCCAATACCTTTACAGCATCATTCTAGTTTGCCTGAGGCAGTTACGCATCCAGAAGGGGCATCATTCTCTCATCAAACTGACGCTGTGACAACGTCCTCAACAGCGACCTACGAAAGCGGTGAAGGCTTTGCAGGAGAACCAGAGCCTTGTACGCCATCTCCCTTAAAGCATAAACCCACACAACTACCACAACACTGGAAGTCGGCAACAGACCAACAGGGAAAAGTTTATTACTACCATGCATTAACAAGAAAAACACAGTGGGATCTTCCAAGCTGGGACAGCAGTCCATCATCAGAAGAGGAACATCATGTTATAGAGCCTGAAGAGACAAGTGTCCTAGCCCACACTTATACCAAAGCAGAAGAGGAATCACCTTCAAAAGCAAAAGTAAAGAAAATGATCAAGACCCCATCAACTCCCCCAGGGACCCCCCCTGAGAGCCCCACCCTGGCATATACTACAGCTGCGGCAGATACCACTGCGCACCAGCGAGAGGAACACATGCATATGGACGAATCATCTGGCAGCTCATCATCACGCCATAAAATCAGGGAATTGTTTAGAATGAAGCTTTCCAATGTGGTTGTGAACTGTCTTAATCCTTTCTTCAAAGTCGACTGTAAATCAGGCAGGATCCTGACTACAGAAGACTTCAAGTTTTTAGCTAGAAAGCTAACACATGGAATTTTGATGAAGGAGCTTAGTCACTTAAAAGATGAAGAAACATTGCAGTGCAATGACTCTGTAAAAATCAAGACTAAAGAATATATTCGAAGTTATATGAAAAAGTTTGGTCCTGTGTATAAACGATCTTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08236 all species →	SRI	SRI (Set2 Rpb1 interacting) domain	Domain	Interproscan
PF00856 all species →	SET	SET domain	Family	Interproscan
PF00397 all species →	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013257 all species →	Domain	Set2 Rpb1 interacting domain	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR035441 all species →	Homologous_superfamily	TFIIS/LEDGF domain superfamily	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR038190 all species →	Homologous_superfamily	Set2 Rpb1 interacting domain superfamily	Interproscan
IPR044437 all species →	Domain	SETD2/Set2, SET domain	Interproscan
IPR003616 all species →	Domain	Post-SET domain	Interproscan
IPR042294 all species →	Family	Histone-lysine N-methyltransferase SETD2, animal	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46711 all species →	HISTONE-LYSINE N-METHYLTRANSFERASE SETD2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0046975 all species →	Molecular Function	histone H3K36 methyltransferase activity	Interproscan
GO:0016279 all species →	Molecular Function	protein-lysine N-methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG023922.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.