Gene detail

Detailed information of PcrG023998.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_61:2089422...2094618
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00466 all species →	Ribosomal_L10	Ribosomal protein L10	Family	Interproscan
PF17777 all species →	RL10P_insert	Insertion domain in 60S ribosomal protein L10P	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043141 all species →	Homologous_superfamily	Large ribosomal subunit protein uL10-like domain superfamily	Interproscan
IPR033867 all species →	Family	Ribosome assembly factor Mrt4	Interproscan
IPR043164 all species →	Homologous_superfamily	Large ribosomal subunit protein uL10-like, insertion domain superfamily	Interproscan
IPR001790 all species →	Family	Large ribosomal subunit protein uL10	Interproscan
IPR040637 all species →	Domain	Large ribosomal subunit protein uL10-like, insertion domain	Interproscan
IPR051742 all species →	Family	Ribosomal Assembly Factor uL10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45841 all species →	MRNA TURNOVER PROTEIN 4 MRTO4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0000956 all species →	Biological Process	nuclear-transcribed mRNA catabolic process	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0030687 all species →	Cellular Component	preribosome, large subunit precursor	Interproscan
GO:0042273 all species →	Biological Process	ribosomal large subunit biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14815	MRT4; mRNA turnover protein 4	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.