Gene detail

Detailed information of PcrG024019.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_61:2450230...2470708
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG024019.mRNA1

ATGAATGCAAAGAAGAGGTATTCTTTGATATTTCTGATCAGTTTGCTGTGCTGCAGTGTTTTCATCGTATACAGAAAATCGACCCGTTTGTGGCGGCGTCGTTCGACAACAAGGACAAGTTTTCGACCCAACGGCGAAATTCGCCCTCAACAGCAAGGACTATGCTTCTTAGATACAACAGATGAATTTAGTCTGCGAGATCATGCTGGTTTTCGCCATGAACGTGCAGCCGTGTCGAGTAGAAAATGCACAATGGGAACATGTTTTGATAGGACCAAGTGTCTGAATGACTTTAAAGTTTATGTTTATCCAATTCAAACCGGCGAGAAGATTTCTCCTTTGTTCGGTAAATTGCTAAAGGTACTGAGGGAGAGCAGTTTATATACAGATGACCCGAAAAAGGCTTGTTTATTTATACCTTCTGTCGATACTTTAGACCGCGATAATTTGAGCGAGGACTATGTTCACGAATTGCCTTCCAAGATCTTGTCGTTACCGCATTGGAATGGAGGCGCAAACCATGTTATATTTAATCTCTTCTCTGGTACTTGGCCGGATTATTCTGAAGACTTACGCCTTGATACTGGTAAAGCGATTTTAGCGAAAGCTTCGCTTTCAACGGATTTTTATAGACCAGGTTTTGACATTAGTTTTCCACTGTTTCTAAAAACTCATCCTCCAAAAGGTAACTCTGTGGATTCTCGGTCGAGCTGTGCTATATTTCCCCTAAATAGGAAATATAAACTTGGCTTTAAAGGGAAACGTTATCTAAATGGTATAGGAAGCGAGTCAAGGAACTCATTTTACCACATTCACAACGGAAAGGACATCGTCCTTTTGACAACTTGCAAGCATGGAAAAGACTGGAGAAAACACATGGATGAACGATGCGAAAAAGACAACGACGAGTATGACAAATATGACTACGATGAGCTTTTAAAAAATGCAACATTTTGTTTGACTCCTCGGGGAAGACGTCTTGGCTCATATCGTTTCTTGGAGTCTCTCCAGGCTGGCTGTATCCCAGTGCTACTGAGTAATGGCTGGGAGCTTCCATTTTCTGAGGTGATTGATTGGAGCAAGGCCCTGGTTCAGGGTGATGAACGACTTCTGACGGAAATTCCATCTGTTGTGAGATCTTATAGTAAGGAACAAATCCTCGCTATGAAACAACAAGCTCTGTTTCTTTATGAGGCATATTTCTCATCTGTAGAGAAGATCTTGCTTACCACCTTAGAGGTGATTCGTTCACGAGTATTTCCAAACAAAGCTGCCATTAGACCAATGTGGAACACATTTCCTGGAGCACTCGTGTCACAGCCTCAATATTCTATGGATCCTAAGGACATTCCTTTTTATAACATCAAGCTGGGAGTCGTAGAAGAGAAATTCACTGCTGTTATTTACACCACAACATCTACTGTTAGGGACTCGTCAGCTCTTGTCAGATTAATTAAGAATGTTGGACAATCAAAGTTTATTTCTAAGATTGTAGTATTATGGACATCTGATGCTCCTATTCCTCACAAAAAGAGATGGCCACAAGTTAATATCCCACTGGTCATTGTGCGACCAGAAGCTAAGACAGGAAACAGTCGGTTTGTGCCGAGAACAGTGATTGAAACCTCTGCTATTTTATCCTTGGATGAAGATATCAAGCTTAATTCTGATGAGATTGACTTTGCATTTTCAACGTGGAGAGAGTTTCCTGACCGCATTGTAGGTTTTCCAGCCAGAGATCATTATTGGGATAGTGGGAAATCTCAGTGGTTTTATTCATCTACCTGGAGTAACACATTCTCTATGATTTTAACAAGTGGAGCATTCTATCACAGATTTTACAATTTCCAGTACACCCACAATCTTCCACCCAGGGTTCATCGCATGGTTGAACATTATGGTATGTGTGAGGATTTGGCCATGAATTTCCTTGTCGCAGACATCACAAGAAAACCACCCATCAAAATCTTGCCTCAGAAGTTATTTCAAGACCTGTACAACAGGAATATGAAGTACAGCAGACTTGTACAGCTCTTTGAAATTCGACAAAGATGCATGGAGTCTTTAGTTGATATTTTTGGGTACATGCCGTTGGTAAAGTCCCAAATCAGAATGGACCCGCTGCTGTACAAGGACCCTGTGTCAAATTTACGCAAACAATATAGATTATTAGAGTAA

Transcript

PcrG024019.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09258 all species →	Glyco_transf_64	Glycosyl transferase family 64 domain	Domain	Interproscan
PF03016 all species →	Exostosin	Exostosin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015338 all species →	Domain	Glycosyl transferase 64 domain	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR004263 all species →	Family	Exostosin-like	Interproscan
IPR040911 all species →	Domain	Exostosin, GT47 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48261 all species →	ACETYLGLUCOSAMINYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02366	EXT1; glucuronyl/N-acetylglucosaminyl transferase EXT1	EC:2.4.1.224 EC:2.4.1.225	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.