Gene detail

Detailed information of PcrG024279.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_64:1188957...1191726
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG024279.mRNA1

TTTAGGAGCATTTTCTGAGAAAGTTCTGTTACTTTTGCTGTTTTCCTTCGAACCTGAGCCTCTCCGAAACTTATTTACGGTTGTTATTTGAGAAAGTCTCTATAAGGATAGCGGCTTCAAGTTCAGAAACGAAAATTTTCAGTGCAAAATGCCGTTGTTTACATGCATCACATGTCGTGTGTCCTTTGCAGATGGCGACATTCAACGTCGTCATTACAAAACGGACTGGCATCGTTATAATCTGAAGAGAAAAGTCGCTGAAATGCCGCCTGTAACTGCTGAAGTCTTCCAGCAAAAAGTCCTCGAACAAAGAGCAGAAGTTGAAGCCCAGCAGCAGAGCAAAACGAAAACTATGCACTGTAAACTGTGTAACAAGACGTTTTCCTCAGAGAATGCTTATGGTAACCATATGAGCTCTAAGAAACATAAAGAACTGGAAGCCGCCAGTGCTAAGAAAGCGAAAAAGCAGATCACAAAGGGTTTGACCATGGAAAGCAGTGAAATTGAGCAAAAAAATACAGATCCCGAAAATGCCGAGTCACTGTTATGTGATAATGTtgatgacgatggtaatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgaGATTGAAGAAGACACACTGGAAGTAACAGATTGCCTGTTCTGTCCACACCGCAGTGTCAGCTTGGAAGAAAACATGAAGCACATGACGAGGTCCCACAGCTTTTTCATCCCAGACTTGGAGTTCGTTGTGGATTTAAAAGGGCTGTTGGCATACCTGTGTGAAAAAGTCGGAGTTGGTAACATGTGCCTTTACTGCAATGACAAAGGAAAAAACTTCTACTCTACAGAAGCTGTCCAGAATCACATGGTAGACAAAGGCCACACTAAAATCAACTATGAAGGAGATGCTGTTTTGGAATATGTTGACTTCTATGATTTCAGCAGTAGTTATCCTGATTACAATCCAGATGATGAAAACAGCAGTGAGGACATCCAAGGAAAAGAGACCACTCTAGCAGTCAATGAGCAGACATTAGAACTATGTCTACCATCAGGTGCAAAAATTGGTCATCGTAACATGCGTCACATCTACAAGCAAAACCTCCCCCCTGAGAGAAGTCGCCATGCCAAGATGATCCAAAATATCATGGCGGATTACAAAGCTCTGGGTTGGCATGGAACAATAGGAAGCGCATCACGGCAGAAGGTTAAAGACATCAGGTTGCAGAACATACAGCAAGCAAAAAGAACAGTTAATGTCTCAGTCAAAGCAAACAAACTACAAAAGCATTTTAGACCCCAAGTAATATTCTAGTGTATGGATGGACAAATTATATGTAAACGTATTATATGTAAAACTATGTTCAAAACTTACCTATTCAAAGCGCATTTTAGGCTTAGGTATGTACAGTGGTACAATATAAGGTAAATGTACAATATACAACAACATAAGGTACATGTAACATTATTGTGGTATAATGAAGGACATCATCATCCTATGAAGGTCCATGTAACTAATAGTGCTTGGCAACTTCATTGTGAACACTCCTGGCCGGGCTCCGTCAGGTGTCAAAGACAAAATCTGTCATCAACTCCACTCACTGTAGCACTGGACACATTTACTAGGTCTTTCTTAATGTTATCAGAAAAACCACCAAActgtcccacacactttcgttaaccaacgtcatcaaattcttttcccgcaagcatgttgaagttcgattcaaattaaccagagaccttaccagttacaaagtccccttcttcttaaatgaaatcttcaaaaatgttccttcttgagtttatctgaaggttttccccacgattttacaatcttccttgtgtactAAACTCTGCCGTAACATCCAAAAAATTACAGTAATTTACGAATTTCAGGTGCCTCTCGTTGATCGAAATGTACATGAgcaggaaaggaattttttttatgacactggttgtcaaaagtgagtgggtcagtgatacaaagaattgaatctattctgcagttcagttggttttTTGTAATAAGTAGAGTACTGTACATATATTCAGTACATGTACCTTCAGAATTGTGATTGTCAGCTTAATGGTTTGTCATATGACCTATTTTTTGttagtagaaactcaactgttctattcaaaatccgagaatctgattggttccctcactgttgtctattcgctgatagacaacggtcacgcgcacgtagctttttaagcggtaaattttcttgatttttgtcttgaaagtgcacaatattgtaggttttggactgcaatcgtttatagtttctatgaaaacaataagactacttgcccttgttttctatgagcgaaagttaactcggctatgcttcAAGACAAGACAAGTcaactttatttgcaccctaagttaaaataaattattttacaattcaaagaatTATttgactatttgctcatagaaaacttgggctcgttgtctaattgttaattaTTCTAACAGCAACACACCTTGAAAAAATATTTTAGAGGTGGTAAGAGCTTTTAGATTGAAATAAATTAGCAAGTAAATCAAATTCCAGATGGTTCTCGCCCTGGTGTTTATAATTTTCTCATTTCGAGTTCCTCTAGAGAGGAAAACATATCTTAAATATAGCTTCTTACCAAGAACTCTCAAACAATGGAACGCTTTGCCCGCCTTTCTAGTTACTGTCCCAAATCTTAATGCCTTTAAGACTGGGGTATGTACATTGAACACTGAACATTAACA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12171 all species →	zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	Family	Interproscan
PF12756 all species →	zf-C2H2_2	C2H2 type zinc-finger (2 copies)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022755 all species →	Domain	Zinc finger, double-stranded RNA binding	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR041661 all species →	Domain	ZN622/Rei1/Reh1, zinc finger C2H2-type	Interproscan
IPR040025 all species →	Family	Zinc finger protein 622/Rei1/Reh1	Interproscan
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13182 all species →	ZINC FINGER PROTEIN 622	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030687 all species →	Cellular Component	preribosome, large subunit precursor	Interproscan
GO:0042273 all species →	Biological Process	ribosomal large subunit biogenesis	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14816	REI1; pre-60S factor REI1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.