Gene detail

Detailed information of PcrG024396.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_65:252166...268144
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG024396.mRNA1

CTCGCTTTGAATTTTAAAGCAAACTAAAAAGACTGGGCCTAGTTGCAAAGTGACTGCAAACTGAGCATGTCCAGCATGTGATTTTGTTAGGAATACGAAAATTTCGTTCGAAAAAGCAGGAAAATCGTCCGTTTGCCCCATGGTATAGCCTTACGATTCGGTCAGTTGGAAAGAGAAATGCCAGATAAACGTATATTTTGCTGATTACAGGGATTTTAAGAGTTCAGTCAGAGATGGTAACGGTGCCAACCCCTCAATGTGTTGGGCGAGAATTCGTCCGGCAGTATTACACCCTCCTAAATCAAGAACCTGTCCAGATTCACAGGTTTTACACAAAGCAATCCTGGTTTCTGCATGGGAGGGCTGAGAACGGACCCACTGAACCCCCTGTGATTGGTCAAGAGGCAATCTACAGTAAGATCAAGGAGCTCAATTTCCATGACTGCCACACAAAGATCAGACAGGTTGACAGTCACTCCACTGTTGGCGGAGGAGTGGTAGTGCAGGTCTCTGGTGAACTGTCTAACAATGGACAACCCATGAGGAGGTTTATGCAGACTTTTGTCTTGGCTCCCGGTGAGGGTCCAAGAAAGTATTATGTTCATAATGACATATTCCGTTATCAAGACGAAGTGTTTTCAGAGGAGACAAGTGACGAGCCAGCTGATGGAACTGTTGATTCTGAAGGTGAAGAGGAACCCCAACAAGTGCCAGtgaacaacagtgtcagcagctatgaccaatctaaccaggagcaacATGTAGTACAAGACAGACCTAGTGACAGCCTGTACTATGCTGACCAGGGACAAACCAATGGTCCTGGAAGTTTGATGAACCAAGAGCCATTGCTtgatgaagatgttgatgatgaggaagaagaGTCACTAGAACTGCAAGAAGTCGTCATTGACAAACAGCCTCAGATGGCACTTCATGAACCAATCAAAGATACACCAGTCATTCAGCCACTGGAGGACAAGGAACCTCTTTCTGTGTCCGCTGATGGACAGCCTGTTGAAGGTTCTTATGAAGAAGAACAGGAGGACATTGAAGAAGAGGAGGAACCAGAAGGGCTAGGGTCTGAACCAGAGGCACCTCTAGAGGATGTCTCTGGTGAACCTGCTGAATCAGTACCAGAGAAACCAAAGACCTGGGCTGCCCTTGCTGCATCACGAGCACCATCAGCTCAATCAAACTCTGCGCCGACCACAAACTCACGACCAGTGCGACAGGCTCAACAGCCTCCTGCTCAGCCTGTGCTGCCACCCCCACCCAGACCCCAAGCTGCTCCCGCCCGCCCTTCCAAGGAAGCCCGTGGAGGAATGAGCAACAGAGAGGCGAGGATGACTGCACGGAATGCACCTGATAATCATCAGGTGTTCATTGGAAACTTACCTGTTGGAGTCAAGGACGATGATGTGCGAAATGTGTTTTCTAAGTATGGAACAATACTTGAAATCAGGCTTAATCCCAAGAACTTTGGATTTGTCATCTTTAACAGCCCTGAACCAGTGGAACAAATCCTTAGCAACAGACCGATTAAAATCGGTAACCATGAAATCAACATTGAAGAGAAGAAACCCAGCGGAGCGGTTGGACGCGGCGCAGGCGGAAATCCCCGTCGGGGTGGTAGTGCGGGCGGAGGTGCTCGAGGAAACGCGCGCGCCGCTGGCGGGGGTGGTGGACAAGCTGGCCGAGGAGGCACTGGGGCGTCTCGTTCCAGTACCCGCGGAGGCTTCGGAGCGAGTGGCACTGGAAGCTCTGGGTCTAATGCAGCAAGCGGGCGATCAGGCGGCCGCAGGGACAGTGGAGGCCGCGGCGGGAAATACAAGTAGTCTATCGCGATGGCGAGTTGAGAGCGAAGAGTAGCGTAAATTATTATCAAGGAAAAAGAAAACAAAGAAAAAACGAAAGACCTAAACATTGCAGACAGCTATGGTGGCGTTCTTTTCACTTCTCCTAGAACCTTTTCATGTCGTTTCAGTGTATAGTGTGTATACCGTGTACAGTGGAGACTCATGACGAACTTGTTTGCATTTTGTCTGCTGGCGGATAACGTTTTAGATTGTTGTTAGTAGTAGTTTTAATATTCATAGTGTCACAGTTTGAGTGTAGAGTAAAGCAAGTGTTTTTTTTTTCCTTTGTTACGTAATAAGCCATGTACGTCTTTTGTTACGTAATAAGCCACGTACGTTTTCCAAGGCAAGTGGAAACTCGAGGCTTTTACACCAAGCCATACTACCGCCATGGATTTGCCACCCTTTTACCGAACGCTCAACACGCGTGAACTTTATGAGAAGTGAAATTTCAGATTTAAAAATAATTGTGAAACTTTTTTTAGTATAGAAACCATCCAAAGTTATATGGAAATGCGACGTTTGCAATATTTATATTGGATACCACTATTACAAATCACCAATAAATAAAAAAGAAGCCTGCAATATTGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF02136 all species →	NTF2	Nuclear transport factor 2 (NTF2) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039539 all species →	Family	Ras GTPase-activating protein-binding protein	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR032710 all species →	Homologous_superfamily	NTF2-like domain superfamily	Interproscan
IPR018222 all species →	Domain	Nuclear transport factor 2, eukaryote	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR002075 all species →	Domain	Nuclear transport factor 2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10693 all species →	RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24983	G3BP2; Ras GTPase-activating protein-binding protein 2	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.