Gene detail

Detailed information of PcrG024627.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_66:2656188...2687829
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG024627.mRNA1

ATGGCGTCTAAGAGGCCGAGCTCCAGCTTGAAAAGTCACTTTGATATAAGCAAAAAAAGTAAATCTGGAGCAAGTGGTCACCCAGATGATGGAGATGGAGACGACGAGGGCTTCGTGGATGGTGCAATAGTGCGTGTAAAGATGCGAAACTTTGTAACATATGGAGACTGCGAGTTTCGACCAGGACCTCACTTAAATGTCCTCTTAGGACCAAATGGTACTGGCAAATCTTCAATTGTCTGTGCGATCTGTCTTGGACTGGCTGGTCATCCAAAGCTTCTGGGTCGAGCCACTGAGGTTCGAGAGTTTATAAAGCATGGAGCATCTCAAGCCATGGTTGAAATTGAACTGCACAACTCAGATGGAAGGAATCATACAATAACCAGGGATATCTTTAGAGAGGACAATCGGTCTACTTGGAAAATTAATGGGAAGTCTAGCACAATGAAAGAGGTTCAAGAATTAAGCAAACAGTTGAATGTGCAAATTGGCAACCTCTGTCAGTTCCTGCCTCAGGACAAAGTGGCCGAATTTGCAAAGATGTCTCAGCAGCAACTCTTAGAAGCAACAGAGAAAGCAGTTGGTCCACCAGACATGTTTGACACTCATCAACAGCTCATTGAACTAAGAAAGAAAGAAAAAGAACTTGAGGTTTCTCTCAGGAACAACAAAGAACATCTTGAAAAGCTGGAACAGCAAAATGAACGACTTGAACATGAGGTTAAAAGGCACCAGGAACGAGAAAGACATCTACAGAAAGTGCAGATACTGGAGAAGAAAAGGCCTTGGGCAGAATATGAAGCAGCCCGTAAAAAGTTTGTGGAAATAAAAACTGAGAAGGACAAGGTGAAGAAAAGACTGGAGGAAGTCAGGCGCCAAAATGCTCCAATGCAAAAACGCCTTGATGAAGTAACAAAAAAAGTCCGAGAACTTGATGAAGCCACCAGAGAAATGATGCAAAAAGGCAATGATGTGTTGAAAAAGGCCAAGTCAAAGAGTGAACAGATTGAGAAGAAAGGAGATAAGATTGAAGAATTACAGGGGGAACTGAAAGATTTGAAGGATGAAGAGAAGAAGAGGCAAAAACGGATGAGTGAACTAGAGAGGGCAATACAGGGATATCAGAATGAACTGGACAATTTACCAGACCCATCTGATTTACAGCCTCGTATTGATAAGATAAATTCTGAAGCTAGGCAGAAGAACCGGGAAGTGATGAACATACATAGCCAAGGTCAGGGAGTCAGAGATGATGGAGATCGCCTGAAGGCATCAGTTCAAGACATTAAAAGCAGAATCACTAAGCTTGAAGATATGAAGAATCGCCGATTGGAATGGCTGCGCAATAAATACAAGGATACTTACAATGCTGTGATTTGGCTGCGGGAAAATCAGCACAGGTTCCAAGGTCCTGTCCACGAACCTATCCTTCTACAGGTTGAAATGAAGGATGTCAGAAATGCTAAATATATTGAAAGCTTGATCAGCCAGAATGATCTTCGAGCCTTTGTTTGCAGTAACAGAGAGGATTTGAAACTTTTCCTTGATGAGGTGCGTGACAGACAAGGGTTAAAGGTGAATGGAGTTGCCCCACCAGATGATCCCATTGAAAGTTTTAAACCATCACGATCAATGGAAGAATTGGGACAGTGGGGTTTCTACTGTTATCTCAAAGACTTGTTCACTGCACACGATGATGTGATGCGGTATCTTTGCCAAAATTACCGTATTCATGACATTCCTTTGGGGAATGATTGGACAACCAAAAACGCAGATAAGGTGATTGAAGAATCTGGTGTGACAAGTTTCTATACATCAACCTCAAGGTACACTGTGAGGCGATCACTCTATGGTAACAGGGAGAGATCAACTGTCGTGGATCACATAAGAGATGCCAAGTTGTTTAACATTGCTGTTGATGCTGAGAAGAAAAAACAACTTGAATTGGAACTACAGGACATCAATCAACAAATACAGCAGAAAAATGAAGAGTACCAAAAATTGAGTGAGAGAGAAAGAAACTTGCAGAAAGAACTGGAAGCAATGAGAAATGAAAAGAAAGAACTGTCCTCACAAACACAAAGAAGAAAAAATCTTGAAAACCAACTGGCAACCAAGCAAAAGAATCTGGAGACAATGCAGAATGCAGCACCCGACCTAGAGGGAAATTCAGAAAGGATTAAACAACAGATTGTCAGAATTAATCAACAGAGAGCTCAACTTGCTGTTGAATACAAAGATGCTGTTCGTGAATGCACTCGAGTTGCAAAGGAGAGAATAAAACAGAGTTTACAACAAGTGCAGACAACTATTGAGAAATCCAGAGTGGAGGAGATGTTCCGTGAATCATCACAACAGCTCAATATACTAGAGGGTGAATATCTGAGAATAAACAACACATTAGAAACTCAAAAGAAATTAGCTAAAGATCTGAAAAAGGTTGCACATGAGAAAACTGGAATACCTGATGGTGCAGACTTGCCTAATGAACTTAAAGAGGCATTTAAGCAGTATCCTGATACACTGGAAGAAATTGATGAGATGATTCATGATGAGAAGGCAAGAATAGAGTGCCAGTACCAGAGCAATCCACAGGTCGTTAAAGAGTATGAAAGGCGCAAAAAAGAAATTAATGAACTTAGAGGACAGGTTGAGGGACAGGAGAAAGACTTGGAGGAAGAACAAAAGCAAATGGCAAATCTAAAAGAAAGGTGGCTCACTCCTCTAAAAGACTTGGTGTCACGCATCAATGAAAAGTATGGTGCTTTCTTCCGCATGATGGGCTGTGCAGGAGAAGTCGCTCTTTCAGCAGAACAGGGAGAAAACAATTTTGATAAATATGGAATTCAGATCAAGGTGAAATTCCGTTCAAAGGACAGCCTCCATGTTTTAACTCCCTTTCACCAGAGTGGTGGAGAGCGAAGTGTGTCGACCATGTTATATCTAATGGCTCTGCAGGAACTTACTAAATGTCCCTTCAGGGTGGTGGATGAGATCAACCAGGGCATGGATCCTAACAATGAGAGGAGAGTTTTTGAACTGGTTGTGGAAACAGCTTGTCGACCAAACACCTCACAATATTTCCTAATTACTCCTAAGTTGTTGCCAGACTTGACATACAAGGACAAAATGACTATTTTGTGTGTCTTCAATGGACACTACATGGTTGAACACACTGAATGGAATCTTGGGAAATTTATAAGAAGGAAAAAAGCCCAACAGTAG

Transcript

PcrG024627.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13476 all species →	AAA_23	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027131 all species →	Family	Structural maintenance of chromosomes protein 5	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038729 all species →	Domain	Rad50/SbcC-type AAA domain	Interproscan
IPR010978 all species →	Homologous_superfamily	Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45916 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030915 all species →	Cellular Component	Smc5-Smc6 complex	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22803	SMC5; structural maintenance of chromosomes protein 5	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.