Gene detail

Detailed information of PcrG024704.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_66:4233673...4240194
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG024704.mRNA1

ATGGCTGCAGAAAAACCCACTGTTCTTGTCACGGGCTTTGGCCCCTTTGGCTTACATCAAACCAATACAAGTTGGTTGGCTGTTCAGGAGCTACCAAACACTGAACTGGCAGAAGAAGTCAATCTGGTGATAAGAGAGATTCCTGTAGAGTATACTACAGTGGATGAACTGGTCCCTGTGTTATGGGATGAAGTCAAGCCAAAGCTGTGTGTACACGTTGGTGTCCATGGGTTGGCAGATAGCATTCAACTGGAGATGTGTGGTCATAACCATGGTTACAACAGGCCTGATGAATCTGGTAACAAATGCAGCACAGGCTGTTGTATTGAAGGGGGAAGCGAATGCTTGTTTACTCCTTTAGATCTGGAAAGAGTATGTTCGGAAGTAATGACAGCCAAAAGTCCCTGTCTTGTTGGACCTTCAGATGATGCTGGAAGGTTTTTATGTGACTATATTTATTATAAATCACTACATGTTGGACAGGGTAGAGGCACGGTGGCATTTGTTCATGTCCCACGTGAAGATTCACCATATAGTGTCGAAGAATTGGTTATTTCACTAAGACTTATCGTCTTGGCTATGCTAAAACAAATCAGTTAGTGAAATTGACTCAGTAGATTTCCCAGGGATgggtgactcctatttgaaacagaccaggatgttcatgggaaaatttaaacattcaaaactcacgtgtacccacccctaagcgagatgatgagcatccctgtctgtttcatgtgagagtccccccaccccccGTGGGGGGGGGGGCAGATTTACTGGGAAAGAGGGATAGAAGGGAGGGATGGCTGCAACTTTGATAACACTTTTTTGGAGAATAGAAAATTTTTGAACCCCGCAATTCTATAGAAACTACCAAAGCATACTTTAAGAGCCTGTCAGTTTTCCCATGTATAAAAATGCAAGGGATCTTTGTTAAAATTTTGAAAGGAATTTCTAAGAAGTACTTTACTCTGACTTTGTGGGTGTGCCCATAAATATATTTGAACCCCAATGAACATGAAAGAACTACCAATGATAAAATTCTTCAGGAAAAGCAAAGATTGAGTTTAATTATTAGACTCAGTGTTTGCTTTTCCCTGTTGAGAGCATGTCCAGGGTGCAAGACACTTCTATTCTTAGGTGTTTGAAAACAAAACAATGCTCAAATTGATGTATTGAAGTTTTATGAACAATCAAGTGCTGGCACTTTTAGAACATTTCAAGTTTATCCAGTTTTCTACTTGTAATCAGCCACAATTTTATTTAATATGTTACTGCCTCTAGGGTATTTTTTTCAACTTTGTATGCTATCAGTTGTGGGGGATTTGTAGTACAAGATGTAGTGCTGTGCACTACAGTGTAGTGCGATATACAATATTATATTGATTATATAACCAATCATAGGGTCCCAGCATGATGGGGGGGGGGGGGAGGGGgggctactccctatattgcaccatgcagggaggctccatccaaaaagggtgacttttccaggctgtagccataggaacagaaaaggtagggatttctctctttagagtatgaaaaatggaaagggaagggaaaactgtcatttaggcatttaaaaaagtcttacaaaatatttcaaacagaCTCACTcaatagtcccataaatctgtcacttttttagtgtgtacgcactaacagttaagtccctgccactattccctgcaactagtaccctagtgtgtgcctagcttAGGAAGTTTGGGCCTCAGTGCGAAGCCTCCCCATATAAATAAAATATTTTTTAGTAGATCCTGTGGTCATAGTGTAATATGTAACAtaccgtatttactcaaataagcacctcggcgcctattaaattttttgtgccacaagtgcgctgctttattcgagggcggtgcttatttaaaaattgcacgtgagaaagaaatattttcatttcatttaatggtctatcttctttgtgtacgaaagacttacaataactaactgaagtctcttttgattgtcatcattcgcctcttctggcacttttcaatggtgttttcactcaacttcgatctcactctccccttctatagcatcgtttttactaggttaagaaagtaatgtccaatgctgttatgttgagttaagtggaactactcgaataagcgtcgcattgggaccgcggcgtttattaacgtttctttcccaaatgcggtgcttattcgagggcggcgattatttgagTGAATACGGTAATGTAGTTTAACTTGGCCTGACATGACAGAGGAAGGTAATGTAAAATGTAACGTAAAGTAATAATCCTAACATTAAGAAATGTTAGAGCTATTCATCTTTCAGCATGTTAGTCCATGAAGTCTAATCATAGTCATAACAAACTCAATAAAGACAGGACC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01470 all species →	Peptidase_C15	Pyroglutamyl peptidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036440 all species →	Homologous_superfamily	Peptidase C15, pyroglutamyl peptidase I-like superfamily	Interproscan
IPR016125 all species →	Family	Peptidase C15, pyroglutamyl peptidase I-like	Interproscan
IPR000816 all species →	Family	Peptidase C15, pyroglutamyl peptidase I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23402 all species →	PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0016920 all species →	Molecular Function	pyroglutamyl-peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01304	pcp; pyroglutamyl-peptidase	EC:3.4.19.3	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.