Gene detail

Detailed information of PcrG024756.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_67:1176163...1184884
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG024756.mRNA1

TTTTTATTATTATTGAACATTAAGATCATTGACAACTGAGCAATTTCTTAATAATAGTTCAAACGCTCGTATCTCCCTTGACAAAATATAATCTTGAAATTTTTGACATAAAAGTAATTAACAGATAATAAACTCTACTTTAATTATCACATCATGAAAATGCAAGAGCAACATTTTTCATTTACAGTATCTACTTAATTCTTATTCTTATTTAATTTTAACTGCAATAAACTCTAGACAACTAGTTTATAAACTACAAAACACATTTGGTTAAGAGCTCAATAgggggagggcgaacccataactacaaaatggttgctatggatgacttccaaccatcataacttccttagtatcttgagtttatagtttttggttatgtttgttctgttagaggttgccttcagttttggcagtcatgaccatatttggtaagtcacatgaccagaacacaaaaacctcataaactcacacagcatacatccttctccaatgaaaacaaaaagccaaagggtagagtgcattcagatgcaaaatctgtagcatggatttgttgaaattcatgttattgaagaaatgatgatgtcatagctttttcagtaatgcgcatattaacagatccatgctacagattttgcttctgaaattgaatgcaatcttccctgtagtgttggtttcaacgaggaaagatgtatgctgtgggggtttatggggtttttgtgctctggtcaccaaatatggtcatgactaccgaaagtgaaagcaacatctaataaaacaaacatagccaaaaaacatattactaaggaagcccaagatatgacagttagaagtcatccatagcaaccattctgtagttaagggtctccccccttAACTCAAGAAGCTCTCAAAATACTAACTTTAAAGTACCTGCTTAATAGAAACATTTTACATGTAACTTGAGGAAACACCATGAAATAGTATAACCCGAACAATGATAAAATATCAACAATCATTGACTGAATTGGATTCATTGACTTTCACAGAGGATGATGAAATTGATGATCAGAAAAAAAAATTTTTTTCTTTGAGAGAGGTGGTAAGAAATTGTTATTTTGAGGGAAGAAAGGAGTGGTTTGGGTTGCCAGAAATTTTTTTGTTGTATTAGCTTTACCTCTAGAATGTCATGATCCTTTTCAGTAATTTCTGAGCAAAACAATCTCAAAGAAACTATGCATTGATAGGTAGAGATATTTGTACTTATTCTAAACTAAACACAAAGTGAGGGAATTGTCCTTCCCTAATGTTTGTTTTCAAATTCTTCTTGTGGTTTTTGAGGCTGAACTTCACACCAGGACACTGAATGTTATTCAAGCCACCCTTTCCATGCCAAATGATTGGAcctgacatggcagccttcacgtgatacaaaacacctttctttaaaagcatcgggctgtcaaatgtcatgtcaaagccataaaaactaccttgatcctttaattgcataagcacagaagaatattttcctgtcttggtagccataactgaacctttagtagtatctcttatggttactgtcacttgatatttccgactctggcttccaaacataccgacaccatgcaagacaacgtccctattgacagcaaagtaaaggcagtctcgctggtatgagtggtatggattgttgccagcttccagcactacggagttgaatcgacaacattgttgacgcagaccataccttttagcttctatgaattccactggcgttgtcaaaactgagttgtaatactccaccatagtaaaagcttcttttgacgtcaatattttacattttaggacagtactgtcaaagtcatcgcgtgtcatgactggaaaacgtatagctttgacaatcttgtccccaaggactgaccttttagttgtcccatcagctgttaaacccaaacgctgacattccttagctgcccagccgtccactgctttgaacaagtccacttctttaatgttcaacgaattcctctcgacgagttcctccaacaaagacctctctactgtttggaatgactctgttttaacagcttcttctgcatgcttgtcgatcactttccagcactgctttacaagctttttctctccgtagttatgagcgtgagtcatcacgcaaaacacattagaaacattcaagactttttccagatactcagtgcatctatcaacaagagatggtaggatatatttcttcgccaaatacaacacttgcatcacgtttccttcatttaatttcacttcgtcacagtacataaagcgaaacagttccagcagactttcgtactcacagtcagggagaacaatagagtttgtcttctccgcaaggtcgccaaagaacatggcaaaaaacacagggctgcttatggccagtacaaacttgtgagcaggaatcgctttcttacacctcttgttttcattctcgtctaattgcactggaacgacaaagcttacatcactcagaagctcattgttaaacatgaacttgcttcgtgctcgaatggttggtcttgttgtctgccacgtttctttcTGAGAGGACATTTTGAAGAAAGAATTGCAGGGAGACTCGAAGAATAAAATGTACATGTAACACGAACTGTATTTTGCAAAATGGCGCGAAATCCGCGTAAAAGAACGTAAAACGCGAAACAAACGGCAAAAATTCGCCAGGCGTTCCTGTGTGACCGAGAGAGACTGTAAACCAGTATTTTAGTATTTAGCGCCCGGTCCTACCCGGTCACTTCCTTTTTCCGTGCCAACTCATTCAACATGGCGGTCGGTAAGAAACTCACAAAGGAAGACGAAATTTTGCTGCAAAACTTCAGTAGAACCGTCTCCACGAAATCTTCAGCTTTATTTTATGCCAACGCTTTCTTCGTGTCAGCCATTCCCCTATGGCTGTTCTGGCGGATTCATCAAATGGATCCTTATTCTTCTGGCATCATGTTTGTTGTGATGACTCTAATCAGTACGTGGTTAGTGGCTTTTGCCTACAAGAACGTGAAATTCCAGCTGAAACATAAGATTGCCCAGCGTCGAGATGCTTCTGTTACCAAAGAAGTTAGCGTGGAACTGGATTCTAACAAGAAACTGACCCGCCAAGAAAAGGATGAAAGAATCCTTTGGAAGAAGAACAAGGTTGCTGAGACTGAAGCCATCACTTTCTCTATTTTTTACAACAATGCCCTATACTTGTTTTTGATCCTGATAGCGTCATTTTATGTTCTACGAACATTCAATCCTGCTGCAAACTACTTGCTGTCTACATCCCTGGCTGGCGGTGTTCTAGCTTTGCTGTCGACTGGGTCATCCTCTTGAGAAGTGAAATGGCCAACGTAGCTCAGCTGTCTTCCATTTATTGATTTTAATAAATGACATAGTTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07074 all species →	TRAP-gamma	Translocon-associated protein, gamma subunit (TRAP-gamma)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009779 all species →	Family	Translocon-associated protein subunit gamma	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13399 all species →	TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006614 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13251	SSR3; translocon-associated protein subunit gamma	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.