Gene detail

Detailed information of PcrG024784.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_67:1653012...1683948
NR annotation: no NCBI-NR hit recorded
Species abbreviation PCRUS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG024784.mRNA1

ATGAGGCGTCTCTCGCAAACTTGGAAGCAAAAGAGACCGTCGGAGCGAAATCAACATGCTTTCAAACAAAGGGTCACGAACGTTTGTGAACTCAAAAATGACCAGGATAATCAAAGCAAAAACAAGGCCAGCCAATATGCTGCCAACGCTCTGTCACCAAGTGCTTCCTTCAACTTCTCATTTGGCTTTGAGTTTAATGCCGCTGATCTATCAGAAATGGATAAGGTTGAACAACACCACTGTGACACTATTCCACAATCCCCTGCCACTTTCAAGGATGCCATAAAAGGAAATGTCACACCTAAATTGGCTGTGCAGGCCATTACTACACCATTCAACAGCAACAGAAGAAGTGAATCTGTAGGGAACAAGTTCTGTCGTGCCAGGGAGCGCATCTCTACACCAATCGAGGATTCAGAGCATATGGCATTGTTTTCTTCTACTCATTCACCTGTGTTTTGTCCTGTCACTGGCCCCTTTCAACAGTTTGAAAATAGTGCTCACACATCTCAAGCTAGAAGAGGAAGCCTTGAAAATTCTACTGGCCATGCCAACAAAAGTCATCTGACAAGTGGGCTCTCAGAATCTCACAGCAGGAGTGTCCTAGAGCCTGATGTGAGTACCTCAGGGAACCCTTTGGAGCTTTCTTCTTGGGGCCTCCCTCCTGAGGTGCTGAGGAGGTACCATGAACTTGGAATAACTCAAATGTTCGAGTGGCAAGCTGACTGTCTTTGCACAGGAAAAGTACTCACTGGAGGAAACTTGGTATACTCAGCCCCAACCAGTGCAGGGAAGACAATGGTGGCAGAGTTGTTGATGTTAAAACGAGTGCTAGAAACAAAGAGGAAAGCGCTCTTTATTCTGCCATTTATTAGCGTGGCGCGGGAAAAAATGTTTTATCTCCAGCGTCTTTACCAAGAGGCCGGGGTTAGAGTTGAGGGGTACATGGGCAGCCACGCCCCAGCTGGTGGTTTTGTTTCTGTAGATATCGCAGTGTGCACAATAGAGAAAGCCAACAGTCTACTGAATCGTCTGCTGGAGGAGAATAAAGCGCTGTCTTCTCTCGGAATTGTAGTGGTGGATGAAATGCACATGATTGGTGATCCACACAGGGGGTATTTACTGGAATTGTTTTTGACCAAAATACGATACATTACTGGATGTAACGGACAGAATGGAGGAAATGGAAATGAAGCAAGCGAAGAAACATCGCCCGCAATACAAATAGTCGGCATGAGTGCAACCTTACCCAACCTGGACATGCTCTCCAAGTGGTTATCCGCTGACTTGTACTTCACGGACCACAGGCCTGTTCCGCTGACGGAAATGGTCAAAGTAGGTTCTACACTCTATGACGCTAACATGAAGAAGATTCGTGAAGTCAGCGGTAGGGCTGTCAGTGGAGACGAAGATCACGTGATACCGCTGTGTAAGGAAACCATCGTGGACGGACACTCGGTCTTAGTCTTCTGCCCGACGAAGAACTGGTGTGAAAAGCTATCTGAGACCATTGCCAAGCATTTTGCAGAAATCGGAAGTTTGGCACTTCAAGTGGGAAACGCCAACAGTGCCCGAGGCGCTGGGTTTGTGAAAGCTTCTGAAGTAATCACTTTTGATTATGCCGGACTAAGGGAGGTCATAGAGCAGCTTAAACGTACCCAAGTAGGACTGGACTCGATGCTTGCGCGCATGGTTCCCCATGGAGTGGCATTTCATCATGCAGGGCTCACCTTTGACGAGAGGGACATTATTGAAGGGGCCTTTCGACAGGGGTCCATTCGTGTACTCGTGGCGACGTCTACACTATCTTCAGGAGTAAACCTTCCCGCTCGCCGTGTCATTATTCGTACTCCAATGTTTCATGGCAAGTTAGTGGATGCTCTAGTCTACAAACAGATGGCCGGCCGCGCAGGTCGCAAGGGAGTCGATGCCCTGGGCGAGAGTGTGCTGATATGTAAACCCGCTGAACGACAGAAAGCAGCTTCGCTCTTGAATTCCAAACTTAAAGCCGTGGAAAGTTGTTTGCTAGGTAAAGAAGACAATGGTGGAATAAAGCGAGCGCTTCTTGAGGTGATAGCCAGTGGTGTAGTTACCAGGCCTCAGGATGTGGAGCGTTACGCGGCCTGTACGTTCTTCGCCTCAGTCCCCGCGCAACAAGACGCAAACGACACAGAAGCCGTTATTAAGAAAACCGTCAAGTTCCTTGTGGAAAACGAATTTGTTCGTTTGCAGAAGTGCAGTGACAAGAAGACAGATGAAAACAAGGAAAATAATAGCGAAACAAAGGAGGTACAAGAAGATGAACAGAGATACGTCCCAACTCAACTGGGTGTGGCCACATTATCCTCCGCTCTCTCCCCCGATGAAGCGCTCGTTGTATTTGCTGAAGTGCAGAAAGCACGCAAGTGCTTCGTGCTCGAAAGCGAGCTACACATCATATACCAGGTTAGTGAAAGAAAGAATTCTTACTTCCCGTTTCTCTTCTATCATATTTTATTCTATCATCAATCGTCCCGTCAAAGACAAATGGGACGGCGAAAGGTATGGGTTCGAGTTTAA

Transcript

PcrG024784.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20470 all species →	HTH_61	Helix-turn-helix domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF21099 all species →	POLQ_helical	DNA_pol_Q helicase like region helical domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002298 all species →	Family	DNA polymerase A	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR046931 all species →	Domain	DNA polymerase theta-like, helix-turn-helix domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR048960 all species →	Domain	POLQ-like, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10133 all species →	DNA POLYMERASE I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006261 all species →	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0097681 all species →	Biological Process	double-strand break repair via alternative nonhomologous end joining	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG024784.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.