Gene detail

Detailed information of PcrG024901.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_67:4242874...4264916
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG024901.mRNA1

ATGCCGCGAATTATTATCAAAGGAGGTGTGTGGAGAAACACAGAGGATGAAATTCTCAAAGCGGCTGTTATGAAATATGGAAAGAATCAGTGGTCTAGGATTGCCTCTTTGCTGCACCGTAAGTCAGCCAAACAGTGCAAGGCTCGGTGGTATGAATGGTTAGATCCTAGCATTAAAAAGACTGAATGGAGTCGTGAAGAAGATGAAAAGCTACTTCATTTGGCGAAGCTGATGCCAACACAGTGGAGAACAATAGCTCCTCTTATTGGCCGCACAGCATCACAGTGTCTAGAAAGATATGAATTTCTTTTAGATCAAGCCCAAGCCAAAGAAGGAGAAAAAGATGAGGGTGATGATCCACGGAAGCTCCGCCCTGGAGAAATTGACCCGAACCCTGAGACAAAGCCGGCAAGACCTGATCCAATTGACATGGATGAAGATGAATTGGAGATGCTGTCAGAGGCTAGAGCTCGTCTGGCAAATACGCAGGGTAAAAAAGCCAAAAGAAAAGCCAGAGAGAAACAACTTGAGGAGGCCAGGCGCCTTGCAGCCTTGCAGAAAAGAAGGGAGTTGAGAGCCGCTGGAATAGAGATCCGAAAACACCGAAAGAAAAGACGAGGGGTGGATTATAATGCTGAAATTCCATTTGAAAAGAAACCAGCTCAAGGTTTTTATGACACGGGTGAAGAAGAGCTCCCTGACTATCAACCGGATTTTAAAAAGCTTCGTCAGGATCACTTGGACGGCAAAATGAGAGATGATGTTGAACAGcaagagagaaagaaggataaagataagctgaaaaagagaaaagagaCTGACCTTCCAGGAGCTGTCATGCAAATAAACAAGTTGAACAATCCTGATTCAGTAAAGAAACGTAGCAAGCTTGTTCTCCCAAAACCTCAGATTTCTGACACAGAGTTGGAAGAGATTGTGAAAATGGGCCAGGCCAGTGAGACAGCTCGTCTATCAGTGGAAGACAGCAACATGGCATCAAATGCTCTTCTTAGTGAGTACTCAGTGACTCCTGCGGCAGCTCATGCGTTGAGGACCCCTCGTACACCTGCAGAACAAGACACAATACTACAGGAAGCTCAAAACATCTTGGCATTGTCAAATGTGGACACCCCTTTAAAAGGTGGCATGAATACACCAATGAAGCAAAGTGACTTTGAAGGTGTCACTCCAAGACATCAAGCTATTCAGACACCAAACATGATGCTTGCCACACCTTACAGGACACCTCAAGGAGAGGGGGGAGGAGCCACCCCACGCAGTATGGGTGGAACCCCTCAGAGGGGTGGAGGCGGCACCACACCTGGACGAGCATCAGTGCGGGACAAGCTGAACATCAACCCAGAGGAATCTCTGATGGAGGAGTGTGAATCAGGTTATGCAGTGAAACAACAACAGGAGGAGATGAAGGCACAGCTGAGAGCAGGATTAGCATCGCTTCCAACTCCCTCCAATGATTTTGAGATTGTGCTGCCTGAGACAGCTGAAGAGGAGGCGGCGGAACCCACAGATGACAGCTTTGTTGAAGATGCAGCTGATATCGATGCAAGAAGAATGGCGATGAAAGCCGCTGAAGAATTGAGAGAGATGAGACGTCGCTCCCAGGCGGTACAACGAAAAATGCCACGTCCTTCTGATGCTAACGCCACTGTTCTGCGACCAGCAAATATTGATCCACCTCTTACAGGGTTGCAACAGGCAGAAGAGCTTATCAAGCGAGAGATGGTGACCATGATCAGACACGACATTGTCAGCCATCCCACAGCACTGCAGATCGAAAATCTAACACACAAGAAATCCAAGAGTGCCGCCCAGGCTGTCATCGCCGCTAATCAAGCAGCACTCGACAGCAATCCGCTGGAAGCGTTCACAGAGAAAGAGATCGCTAACGCCAGGGAAGCTTTAGCAAAAGAAATGGAATTCGTCAAGTCTAAAATGGCCCATGGAGATTTACCCATTGAAAGTTACACGAAAGTGTGGGAAGAATGCTACGCCCAGGTTTTGTTTTTACCGACGCAGCAGCGATACACAAGAGCAGCTTTAGCAAGCAAGAAAGACAAACTGGAGTCTTTGGAGAAAAGACTTGAGATGAACCGAACTCACATGACCGAAGACGCGAAACGAGCGGCTAAAATCGAAAAGAAGTTGAAAGTTCTTCTCGGTGGCTATCAGAGTCGCGCTGTTGGTTTAACGAAACAAATAAACGATCTTTACGAGCAAGTTGAACAGACTCACATGGAGAAAGAAACATTTAGTTCCCTGAGAGAACATGAACTGATGGCCATCCCTAAGAGGGTTGAGGCACTGAGAGAAGATGTACGAAGACAAACAGACCGTGAACATCAACTTCAGTCGCGATATTCTCAACTGTTGTACGAAAGAGATGCCAACTACAGTCAGTTACAGCAATACCACTGA

Transcript

PcrG024901.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11831 all species →	Myb_Cef	pre-mRNA splicing factor component	Family	Interproscan
PF13921 all species →	Myb_DNA-bind_6	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047240 all species →	Domain	Pre-mRNA splicing factor component CDC5L/Cef1, second SANT/myb-like domain	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR047242 all species →	Family	Pre-mRNA splicing factor component CDC5L/Cef1	Interproscan
IPR021786 all species →	Domain	Pre-mRNA splicing factor component Cdc5p/Cef1, C-terminal	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45885 all species →	CELL DIVISION CYCLE 5-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0000974 all species →	Cellular Component	Prp19 complex	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12860	CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.