Gene detail

Detailed information of PcrG025145.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_69:2155630...2181070
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG025145.mRNA1

ATGGAAGCAGGCGGAGAAGTCGTCGGAAATGGCACTAATGGAAGACGAACAAGCTCGGACCACAAGGATGGTGGTGTCACATTTTGGAGTAAAACTGAACGTGGAATAAAAGCAGAACTGCGATTACAGCATCATCCATACGACACAGAATCTTGGGGAGTTCTGATCAGAGAGGCACAGAACACTCCTTTAGAAACATCGAGAGTGCTGTGTGAAAAACTTGTAAGGCGATTCCCTAATGCTGGCCGTTACTGGAGATTGTACATTGAGCAAGAGATGAAACATAAGAATTATGAACAAGTAGAAAAGCTTTTCCAGAAATGCTTGATCAAGGTGTTAAACATTGATCTTTGGAAGTGTTACTTGTCTTATGTTAAGGAAACGAAAAGCTCCCTCCAAAACTTTAGAGATAAAATGCTACAAGCTTATGAATTTGCCCTGGATAAAGTTGGACTGGACTTCAACTCTTATCAGATTTGGTTGGATTTTGTGAATTTCTTGAAGTCAGGTGATGCAGTTGGCAGCTATGCAGAAAACCGCAAGATAATCACCATAAGAAAAATCTATCAGAGAGCTGTGGTGACTCCTATCTTAAATTTAGAAGCTCTGTGGAGAGAATATAATGCTTTTGAACAGAATGTAAACAAGACTTTAGGGAAGAAACTGATTGATGATAAAACAAGAGACTACATGAATGCCAGACGAGTTTCAAAGGAGTATGAAGCTATAACTCGAGGATTAATCAAAGGAAATCCTTCAGTTCCTGTGCAGGGGATTACAGATGAAACTAAACAGTTGCAAATTTGGAAAAAGTATATTGCCTGGGAAAAGAGCAACCCATTACGAACAGAGGATACTGCCCTTCTTACTAGGAGAGTGGTCTATGCATATGAACAGTGTCTTCAAACAATGGGATTTCATCCTAACATATGGTGTGAAGCAGCACTATACCTTGAACAAGTCAGTCAAAAGATGATGGACAAAGGGGACATGCAGGGATCCAAAGTGCTGGGAGATGAAGCTGCATCCATCTATGAAAGAGCCATCACAGGACTGATGAAACACAGCATGCTATTGTACTTTGCATATGCTGACTTTGAAGAGGGAAGGATGAAGTTCCAGAAGGCAAAGGAAATCTATGAAAAGTATTTAGCCCTTGAAAATATAGATCCAACTTTGGTTTATATCCAATACATGAAGTTTGCAAGAAGGGCGGAAAGCATTAAAGAGAGTCGAGGAGTTTTCAAGAGGGCAAGAGAGGATTCTAGAACAAACTTTCATGTTTTCATTTCTGCCGCTCTTATGGAGTACTACTGCAGCAAAGACAAATCTGTTGCATTTAAAATCTTTGAGCTTGGTTTGAAGAAATACATGAATGAAACAGACTATGTACTGGCTTATGTTGACTATCTATCACATTTAAATGATGACAACAACACAAGGGTGCTGTTTGAGAAAGTTCTGAGTTCTATGCCCAAAGACAAAGCAAGTGATGTTTGGGGAAAATTTCTGGAATTTGAAAGCACAAGTGGTGACTTGGCCAGCTTAGTAAAGGTGGAGAATAGAAAACTTGAAATCTACAAAGAAGAGTTAGAAGGTCATGAAACATCAGTACTTGTCGACAGGTACAAGTACTTGGATCTCTTCCCTTGTACACCTTTGGAGCTAAAAATAATGGGCTATGTGGGCTCCACAAGACAGAGTAGCAGTGTGCCAAATGTTCACTTGTCTGTTTCAAGTCAAGATGAGCAGAGTGAAGAAAAGCCAGTTAAATACCCCAGACCAGATACATCACAGATGACACCATTCAAACCAACAGCAGGGGCTGTTGGCCTTCATTCTGTACCAGGTGGTGTGTTTCCAGTACCCCCAGCAGCTGCACATCTAATGACCTTGTTACCTCCTCCATCATGCTTTCAGGGTCCATTTGTGATGATTGAAGACTTCATTAGGTTAACCTTGGAATGTCAAATACCAGAACCTCCACCCTCAGGACTGCCAGATGCCGAGTTGGGCCCTGTGAATGGAGTTGAGGGCAGTGAAGAAGGAATGGATGTTGATCAACAAAAACGTGGCGTCAAAAGACCAGGTGCTGATCATGAAAGTGATGACGAGAGTTCTGCTGCACCTCCTGTGAATGATATCTACAGAAGTCGACAACAGAAGAGAGTGCATTGA

Transcript

PcrG025145.mRNA1

GCGCCATGCTTTTGGCGGCCATTTTTCGTTCGAGTTCGGTCTGTTTAGGTGGTATGGTTTAGTTTTACGGCTTTTCCATTCAGCTGACTAGACTTTTGTGGGTTTAGGGTAATGATTTAGACTCGTCTTGGGACTTTAAACGATGGAAGCAGGCGGAGAAGTCGTCGGAAATGGCACTAATGGAAGACGAACAAGCTCGGACCACAAGGATGGTGGTGTCACATTTTGGAGTAAAACTGAACGTGGAATAAAAGCAGAACTGCGATTACAGCATCATCCATACGACACAGAATCTTGGGGAGTTCTGATCAGAGAGGCACAGAACACTCCTTTAGAAACATCGAGAGTGCTGTGTGAAAAACTTGTAAGGCGATTCCCTAATGCTGGCCGTTACTGGAGATTGTACATTGAGCAAGAGATGAAACATAAGAATTATGAACAAGTAGAAAAGCTTTTCCAGAAATGCTTGATCAAGGTGTTAAACATTGATCTTTGGAAGTGTTACTTGTCTTATGTTAAGGAAACGAAAAGCTCCCTCCAAAACTTTAGAGATAAAATGCTACAAGCTTATGAATTTGCCCTGGATAAAGTTGGACTGGACTTCAACTCTTATCAGATTTGGTTGGATTTTGTGAATTTCTTGAAGTCAGGTGATGCAGTTGGCAGCTATGCAGAAAACCGCAAGATAATCACCATAAGAAAAATCTATCAGAGAGCTGTGGTGACTCCTATCTTAAATTTAGAAGCTCTGTGGAGAGAATATAATGCTTTTGAACAGAATGTAAACAAGACTTTAGGGAAGAAACTGATTGATGATAAAACAAGAGACTACATGAATGCCAGACGAGTTTCAAAGGAGTATGAAGCTATAACTCGAGGATTAATCAAAGGAAATCCTTCAGTTCCTGTGCAGGGGATTACAGATGAAACTAAACAGTTGCAAATTTGGAAAAAGTATATTGCCTGGGAAAAGAGCAACCCATTACGAACAGAGGATACTGCCCTTCTTACTAGGAGAGTGGTCTATGCATATGAACAGTGTCTTCAAACAATGGGATTTCATCCTAACATATGGTGTGAAGCAGCACTATACCTTGAACAAGTCAGTCAAAAGATGATGGACAAAGGGGACATGCAGGGATCCAAAGTGCTGGGAGATGAAGCTGCATCCATCTATGAAAGAGCCATCACAGGACTGATGAAACACAGCATGCTATTGTACTTTGCATATGCTGACTTTGAAGAGGGAAGGATGAAGTTCCAGAAGGCAAAGGAAATCTATGAAAAGTATTTAGCCCTTGAAAATATAGATCCAACTTTGGTTTATATCCAATACATGAAGTTTGCAAGAAGGGCGGAAAGCATTAAAGAGAGTCGAGGAGTTTTCAAGAGGGCAAGAGAGGATTCTAGAACAAACTTTCATGTTTTCATTTCTGCCGCTCTTATGGAGTACTACTGCAGCAAAGACAAATCTGTTGCATTTAAAATCTTTGAGCTTGGTTTGAAGAAATACATGAATGAAACAGACTATGTACTGGCTTATGTTGACTATCTATCACATTTAAATGATGACAACAACACAAGGGTGCTGTTTGAGAAAGTTCTGAGTTCTATGCCCAAAGACAAAGCAAGTGATGTTTGGGGAAAATTTCTGGAATTTGAAAGCACAAGTGGTGACTTGGCCAGCTTAGTAAAGGTGGAGAATAGAAAACTTGAAATCTACAAAGAAGAGTTAGAAGGTCATGAAACATCAGTACTTGTCGACAGGTACAAGTACTTGGATCTCTTCCCTTGTACACCTTTGGAGCTAAAAATAATGGGCTATGTGGGCTCCACAAGACAGAGTAGCAGTGTGCCAAATGTTCACTTGTCTGTTTCAAGTCAAGATGAGCAGAGTGAAGAAAAGCCAGTTAAATACCCCAGACCAGATACATCACAGATGACACCATTCAAACCAACAGCAGGGGCTGTTGGCCTTCATTCTGTACCAGGTGGTGTGTTTCCAGTACCCCCAGCAGCTGCACATCTAATGACCTTGTTACCTCCTCCATCATGCTTTCAGGGTCCATTTGTGATGATTGAAGACTTCATTAGGTTAACCTTGGAATGTCAAATACCAGAACCTCCACCCTCAGGACTGCCAGATGCCGAGTTGGGCCCTGTGAATGGAGTTGAGGGCAGTGAAGAAGGAATGGATGTTGATCAACAAAAACGTGGCGTCAAAAGACCAGGTGCTGATCATGAAAGTGATGACGAGAGTTCTGCTGCACCTCCTGTGAATGATATCTACAGAAGTCGACAACAGAAGAGAGTGCATTGAGCAGAAAACACCCTTTCTTAGTCATAACCACCAAAATATGAACAGTATGTACATTTACTGAAAATGCACCAGTGAAAAAATCACTCCTCCTCCTATCCCCCCCCCACCCAAATCTGTGCCCCCCCCCCCCCACCCAAATCTGTGAATAAAATAATAGTCCCGCAACAGCCATCAGTGTATAGTTAGCCCATTAGACTGAGAGTTTTTAATGTTTTGTCGTTAAATCATTCAAACTGGTATTGGCAAACTTTATTTTAACTTGGACATTTTTTTACCTGCATTCCAGTTAAAATTATATGCAAATAAACCAATGTGTGACATCTGAAGTCAATAAGTTATCAAACTTCTTGTAATAAAGAATGAAAACAATTTTATTGAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05843 all species →	Suf	Suppressor of forked protein (Suf)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045243 all species →	Family	mRNA 3'-end-processing protein Rna14-like	Interproscan
IPR008847 all species →	Domain	Suppressor of forked	Interproscan
IPR003107 all species →	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19980 all species →	RNA CLEAVAGE STIMULATION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0031123 all species →	Biological Process	RNA 3'-end processing	Interproscan
GO:0031124 all species →	Biological Process	mRNA 3'-end processing	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14408	CSTF3, RNA14; cleavage stimulation factor subunit 3	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.