Gene detail

Detailed information of PcrG025146.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_69:2181210...2184004
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG025146.mRNA1

AATAGGTACTTCTTTCAGGCAAATTTGACCCCCTCTCTATTACCTTCCCCAACCCAATACCCAGTTTACCCAGTTCACCAAAACTGAACGAGCTTGCCTGGATGCAAGTGAAAGCTTCCGCCGCGAGCAGACTGGTAACCATTCGCAAATCAAAGATGGCGGACAGCACGGAAAGACTTGTCGAAACGCATTCACTAGGATTTGAGGGGAAAATGTAGACTTAAATTATAGTTTATCATGGGACAAGATCAAAGCAGTAGTGTGGCAGGTCAGATGGGCCATCCAAATGTGCCTTATACCTCCTACTCCTTAGAGAAAAATGACAAAGGAAAAACGAATTCGAAGCAGAGAGCCAAGCTCGAGGACATTATGGTGGTCAATGCCCCGACTGGAGGCACAAAAGTCGTCTCCAAAAAGGAAGATCGCGATATAAAAAAGCTGAACAAAATTCCATTCTTTTATCCATTACTTCGAGGTACGATAAATGCCCCCGTAGCGAAGGAGTTGGAATTCTTTGACAAATTCGACCCACGTCCTTGTCTGTCTTTGTGTTCTCGGTACGAAAAACACTTGAAGCAATGCGCGGAAGCTGTATCGTTTGATCAACACATGCTGTCATCACAGATTCGAGAAATGGATGTTTACTGTGCTTCAGTTCTGCGAAGAGTAAACGACAGGTACAAGAGATTATCTCAGGCTGCTGTTCAGCTAAGGAAAGTTGAAGAAATGAATACTAACCTGAAGAGAATTGACGCCAATCTTAAACGGCTTGTACCCATGATGGAAAGACTAAATAACATTTTACCGGATGATGAACGCTTAGAGGAGTTTTCCTTATCTCCTTACAGTGAAGGGAGTATACAAAGCTGACAGATGCACCTGTGGTTAACAAATGTGACTGTTGAAAGGTAGTGAGCTAAGGGCTATGACAAACTTTTGCAGAAACGCGCATGCAAGATAGGCAGCGGTACTCAAATAATAAACTTATGGGACTCTCCCAACAccccccttccccccccccccccccAGTTAGCACTGTGTGACTTTCCTCCTATTTTCATGAAATTTTATACGTGATAGGTTGTTAACCCAGTGAGTACATATACCTTGTAGTTATATATAACAGAACAGCAAACACCTGGCCACTGACTGTTACAATACATGTTGCCAGAattcttggtttacaaccacgtgacaaggcgtccatgttgaaggataaaacagtaaaaaaaattctcacataattagcatgataaaagagttcagttcccagcgcagaaaaacgttttgttcttgtccaccagcatggctgccatgatgtcagctgcaaaccagTGAGTTACTAATGTCTTATGCTTTATCAAATGGTATAAATAACAAGGTGCTCAGAATTTGTTTGGTTCCAGTATTCTCTATTGAATTTGTAAAGAAAGTTAAATCAAAAAAGTAGAATATATAATTCACCATCATTGTCCCTGTTTTCAAAAGATGCAAAACATGGTCAATTATTATTGTACAAATGAAAATTATGCAGAGATTGTTTTATAATTCACATGTATGCACAGCCAAGTCACGTTACCTTTTGTGTGGTGAAATTATTGATATTGTCGTGGTTTGTATAAATGAACTACTTTCAACTCCTATTGCACCTACAGAACCTATTACACAAAACCAATCATTTTTAAACACTTGATAAAATCAAGCATTTGTTTACCCATTTAATGTCTAGTAAGCTGGAAGCTCGTTCAAATATGTATcatacatcccagccttcctatatttcctgtttatttttgtaggatcgtataaaactcctataattggccaaaaattcctatatttcctataaatactgatgaaattatataagaaaataaaacaatcaaggaagtcccaagaccgagtttgtatgaTTAGTGTAaaagaaattgtctttaaacggaggcctaccgaaaacatatggtctgtaccaggggtcactcaaaaaaataaccctaaaatgttggcatgacagcatctataatagtgcaacatttgccctagaactgcatttccaaggttctaggaatcaaaattttcccggggaagcatgatgctggatcaccttagtttctaatacatggaatgtcattcactcaatacttgataaatttcgctgccactaacaaacagtacctgttcattaaaggaaaagacaacttaccagtgcacacagaaatattttacaatcattactacagtaactattgtcatttcaaatggaattagtacaagatgtctgccaaaatggagtaaatagcatttgccaagttctgaaattcttaatttgcctgggggagcatgcccccaaaccccccctcccccccctaactggagtacgtattgggttgcaaatagactcacacttacacaaaagacatataccaccagtgaaaaacgttattccaagagaactttgtaaactgcagttttttgacacagtatgtcaagctcaataaggttacctttacttgatcattcttttGGGATTACAAGGGGAGAATTTCcaaaactttgcgatgtagaggggggcatcatatgctacagagactataaaatcccaccagcccccctgccccattaaaaaggaacagccccttaatttcatacacatacaggcacagtcaggaatgtgacattgattaaattgtttttaaactaatttaaactaaatcctcctataaaactcctatattttgtcctaaattcctataaatctcctatatttttgctcctgtgctcctatttttcctata

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009276 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10158 all species →	LOH1CR12	Tumour suppressor protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018780 all species →	Family	BLOC-1-related complex subunit 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31634 all species →	BLOC-1-RELATED COMPLEX SUBUNIT 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030672 all species →	Cellular Component	synaptic vesicle membrane	Interproscan
GO:0031224 all species →	Cellular Component	obsolete intrinsic component of membrane	Interproscan
GO:0032418 all species →	Biological Process	lysosome localization	Interproscan
GO:0072384 all species →	Biological Process	organelle transport along microtubule	Interproscan
GO:0098574 all species →	Cellular Component	cytoplasmic side of lysosomal membrane	Interproscan
GO:0099078 all species →	Cellular Component	BORC complex	Interproscan
GO:1903744 all species →	Biological Process	positive regulation of anterograde synaptic vesicle transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20819	BORCS5, LOH12CR1; BLOC-1 related complex subunit 5	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.