Gene detail

Detailed information of PcrG025583.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_7:948396...981390
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG025583.mRNA1

ATGGCGGCCATGTGTGGTCGATGTGCACGAAAACTACAACATCTTCGCACAGATTGGCACCGATCATTAAGATCGCTGTGCACTGCATCTTCAAAGTCGTCATCTGATGAAATTGACGATATCAATAAAATTTCAGGAGACATTCAATCATTATTCACTTCTCCTCCCAAGGAAAGAGATCCAATGGCTGTACTGAAAGCCCTGGCATCAACTGTGCAGCCTAATCCTACCGTGCCACATCCTGAGTTTATTGAAGACAATTACTTGCTTCCAAGATATAATCTTTTACAGGAGGAATGTTTACTGGCAAAGAAGTCAGGACAAGAAGCTGCTAAATATGTGATTTCAAAGTGTCCTGGAATTTTTCCACTCAGGAAACCAAACCCTATGTGGGAAGCAGAGGATGCTATTATGGACATCGCCGATGTTCAAACTGAAGATCACTTAAAAAGTGTTATAAAGTCACAGAATGCCAGGAATGCTGTTCAGGCCTACGAAAAACTCAAAGAGCAAGGAGTGGAAGTGTCACTGGAAACACAAAATGATTTACTTGATCTTGCTGCTTATCATCTTGGACACATGTCTGCTGAAGAGGCTTTGGAACCTGTCGAGCAAGGATTCGGTTTTTCAACTGTCGGGTCAAAAGAAGAAACAGCAGACAATGGCAATGAAGCACCAGATTCAGAAAGGGATTTAGTTGATGATGAGTATGATGATAATGAGGCAACAGTTGGGGAAGCTGCAGATAATACTGGACACTTTCTGTGGAAGAAAGGCAACTATGCTGAGCAAATGTTTGAAAGTATGACAACAAAAGATGGTAGGACATACGAGGCAATGGTTCTTggtttattaaagCATAGAAGTCATGCTGAAGCACTTGAAATGTTCAAGGAAATGAAGGCAACTGGGCACCAAGCCTCTGTATTGACATACAACTTGATGTTCATGGGGATTTCAAGATCCTATGACATGGAAAGCAAATGGGAGAAGACACAGAACTTGGTCAAATTCATGGGTGAAGAACCTATTGTCCTCCCTAATCTTAAAACATTCAATTCCCTTATAAGGATGGCTGTATTGAGTCCTAGTGAAGATAAAACCAGTACACAGCTTGCTCTTGGTCTAATTAGGGACATGCTAGCTATTGGAATGGACCCATCATTGGAGAGCTACAATCAGTTACTACGAGCAGAGTATCACCAAAGTTGGGAAGAAAAAAAGAAAAATTCAATGAGATTAAGTAAAGAAAAAAACGCAAGGACAATTGCAAACCCTGCTGTCCTTGATATGATCATCACTCATCTTGAATCATTACCCAGTCTGCCACCTTTACAGGACCCAGAGGATTCTCTCTTCTTTAAGACAGCCATGAGTGCGGCTCTTCTATGTGTGGATGCAAGCATAGCAATACGTATATACAACTTGTTAAACAAACATAACAACATGGCTTTTCTTGGTGAAAAACATGCCCCATTCTACTCAGCATTCCTTTTGACCCTCGCAACGGCCGAAGTTGGATCTCCTGTGTTGTTTGACTATTACAACGAAATTGTACCTGAGAAACTTAGACCCAAAGACCACGTTTACACTGCCTTTTTCAACATGATCAGTAGAAACCAAATGCCAGGAGTAGTTGGAAAACTCTACCATGATATGCGTTTGTACAAGATATCACTGTCAACGACTGCAGCCATAGCTCTGTTCAGAGCACTTGGTGTAGCTGAGAAACCTGAGGATCTCAAGGAGAACCTAGAAATAATGCTCGATGTTTTGCGCTGGATGAAGATATTTAATTTGAAGGTTACTCCCTTTATTATCAATCGTACCATTCAAATGTACTGTTTCAACGGCATGCTGCAGGAAGCCTGGAAAGCATTGGATATGTTTGAGAAAGAGAGAATCCCACCCAGCTACTCTGCTCTCAAGTTCATACTGGAGCTTGCTGCGAAACAAGTGGATCAGTTCAAAGTAGTGAGATGTTTTGAAATGTTTGGCAAGTATGGATACACCTTGAACCAGAAAACGCGAACTTCTTTGTATGACTCAGCGAACATTTCTATAGCCGAGAGGCAACGCTTGGACGCTCTTTTTGCAGACCTTGGCGTTCTTGACCAAAGACGTAGAAAGTTTGAAGCAGGGCTTAGAAGTGAAAACGAAAGAGAAAAGGTGGAACCCAAGACAAGTGATGCTCCATGGGACTAG

Transcript

PcrG025583.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13041 all species →	PPR_2	PPR repeat family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR037387 all species →	Family	Pentatricopeptide repeat domain-containing protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16276 all species →	PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan
GO:0043024 all species →	Molecular Function	ribosomal small subunit binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG025583.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.