Gene detail

Detailed information of PcrG026172.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_72:7747385...7751742
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00081 all species →	Sod_Fe_N	Iron/manganese superoxide dismutases, alpha-hairpin domain	Domain	Interproscan
PF02777 all species →	Sod_Fe_C	Iron/manganese superoxide dismutases, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019831 all species →	Domain	Manganese/iron superoxide dismutase, N-terminal	Interproscan
IPR036314 all species →	Homologous_superfamily	Manganese/iron superoxide dismutase, C-terminal domain superfamily	Interproscan
IPR001189 all species →	Family	Manganese/iron superoxide dismutase	Interproscan
IPR019833 all species →	Binding_site	Manganese/iron superoxide dismutase, binding site	Interproscan
IPR019832 all species →	Domain	Manganese/iron superoxide dismutase, C-terminal	Interproscan
IPR036324 all species →	Homologous_superfamily	Manganese/iron superoxide dismutase, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43595 all species →	37S RIBOSOMAL PROTEIN S26, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004784 all species →	Molecular Function	superoxide dismutase activity	Interproscan
GO:0006801 all species →	Biological Process	superoxide metabolic process	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04564	SOD2; superoxide dismutase, Fe-Mn family	EC:1.15.1.1	Lipid and atherosclerosis	ko05417	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.