Gene detail

Detailed information of PcrG026462.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_75:362447...366647
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG026462.mRNA1

ATGACACGCAGCCTTGTTCTGTCTCACTCTATGGTTTATCTGTTACTGGTAATGGCTTCGACTGGCCACGACGAGAGCGAAAATATAGAAGATATCATGCAGTGTCATGGAGCAACTCGTTTATCTCCTTTTGAGACAAGAGAAGGTAATGGCATTCTCAGTAAACATGTGTATTGTGAGATTAATAGCGAACAACCACGAGTTGAATACCATTTTGACATTTCCACCGTTGTGCAGACGAGAGTTCCAAATGGCACATTGTCTTACTTGACACTGGAAATCAAGTGCTGCTCATCGATAGAGCTGGATTTTACTAATTTGCATGAGTTGATCAACAAAAATGTTTTGTCAAAATTGGTGTTCGCTGGACCGTGCATCGTCTCGATGCAAAATCTTGCCGTTTGGTCAAACGCGACCGATCTGCTCAGTGTGGGGTTCGGAGGAGGTATTAAAGGCCGAAATCCACAGGTTAGAAAGGAGTTCGGAACTTTGGAAAGAAGCATAAAAACACTAACAACCATCGAATTTGATAACGGCACCACTCGAGATATATTGGACACACTTTCTAGTACCGAGAAGAAGTGGCCTGTAATGGCAGAACTTGCATTGTCAAATCTCTCGCTTGAGATAATTCCACACGAATTGCACACGACTATGCCCTTATTACAAACCCTCCAACTGCAGTCCAATAAATTAAAACGCCCACCAAACTTCCCTTGGTTCAATTCTATTTTAGAGTTGCCTCGTGGTTTAACAAGGAGTAACGCCTTTAACGACGAGATTAAGAACCGAGAAGGCATCGATATCGATACCAACATTTATTCTCGCATTTTGAGATTAGACGCTAACAACATCGAAGATCTAGCATCGTACGAGTTTAAAGGATTTCTGCACAAGCTTTCTCTTGCCAAAAATGGCTTGCGAAAAGTGGGGAGAGCATGTTTTCGCAATTTGAACGGAATTCAGGCCATTGATCTTAGCAAGAATAAGTTGGAAGTCCTTCCACCGGCGCTGTTCCATGGGTTATATTCATTACTAGAAATTAGACTCGGCGAAAACAACTTAACAGTTATTCCACCGGAAATATTTAAAGACTTGAAAAATATAAAAAAGATCACTTTAGATTACAACAGATTAAAGAATATTTCAAGCGGATTATTTGTCACGCTAGACAGGCTTGAGGTTCTGCACTTAGAGGGCAACAAGCTTGAAACAATTGAAGAAGGCGCTTTCTCGAATGACTCTGTTTTACAAGAGATTTACCTTCAAAACAATAATTTTACTCATATTCCCTCTGCTATATTTCGCCTGAGGAATGTGTCCAAGATTGATCTCTCCCACAACAAGTTGACTTTCCATAACCTCCTTGACGTTGTCGAAAGTTTTAGTGATCAATCATTTACCAGTAACTTTTCTTTCAAAGGGGCTGGGCCCAAACTACTCATTTTATCAAATAACAACTTTACTGCGTTGGAAATTCGAGGCTTAAGTGAAGTCAAGGAACGCAAGATTACTCGCTTTCTGGAAAAGTACGAGATCCAGTTAGCGGGAAATGCTTTAACCTGCGATTGTAGCATTTTAGCCATCAAACAAAAGATAGAAACTCTCTTTAAAATCAATCCCCCCTGGAAATCACGGTTTAAAACATGGAAATGTGAATGGCCAGTAGAACTGAAGGGGAAAAACATCCTGGAAATTAACGAGAAGATTGTAATTGCACAAAAGCAGCCAAAGGTTTGCCCTGTTAAATGTTCTTGTTTCGAGCGATGTTTGGATAAAACGATCATTATCGATTGCCAAGGACGAAACCTCACCAAATTACCGAGAATACTGCCACATGGTCCGCTGATTGAGCTTAACCTAAAAAACAACAACATTAGAGAAATTCCAGTATATCCTTTCTTAAACAACGTGTTTGCTTTGTATTTGACGCACAATAAGATCCAACATTTAAATGCGATGGCGGTGAAAAAATTGAAAAGGATCAGAATTCTGCATGTTGACTCGAACAACTTAACAAGCCTGCCAAGAAACATCGAGGACATTCGTTTCACAAACATTGCCTTGCATGGTAATGCATTCAAATGCCACTGCTCTTTGAAGTGGATGAAGAACTGGCTACACAAACTGAAACACATGCATCAAGTTGAACATATCGAAAAAGTTCTTTGTGAGCCAGTGGACAATTCCGACGGGTTGAAAGCGATCTATACTTTGCCCAACGAGAATTTTGGGTGCAACGGAACGGCGGAATACGACAGCAAAACTGTAGCCAACAAAACAACTATTGTACAGGAAAAAACTTCAACAATAATTGCTGTTACTCTGGGAGGTTTGTTAGCAATGAATTTAATTATTTTTATCCTGCTGTATAAGTACCGAGCAGCACTGAAAGCCTTCATGTACACTCGCTTCAAATGGCACCAGTTCGACCGCATAGATGACTTGGATTCAACCAATAAGACATACGACGCGTTTGTATCGTACAGTGAAAAAGAACGCCATTGGGTTGAAAATACCCTGCAAGCACGATTGGAAAATCGCCAGCCTTCGTATAAGCTCTGCATTCATCATCGTGACTTTGAAGTTGGTGCGCCTATCGTGAGGAACATTTTGAACAGCGTCGAACAAAGCAAGCGCATGCTCATGGTGCTCTCTCGCCACTTCTTGCAAAGCGAGTGGTGCATGCTGGAGTTTCGTACGGCACATCACAAAGTGCTGGAAGATCGCCTTAAACTAATAATTATTTTGTTTGATGACGTCAACCTAGCTGAGCTGGATGACGAAATGAAGTTGTACATGCGCACTAACACATATCTTAGTGTAAGCGACAAGTGGTTCTGGGAGAAGCTGATTCGCGCGATGCCACAAAGCTCAGTCAGAAACGAATAA

Transcript

PcrG026462.mRNA1

CACTGTCTGTTTACTTATAAAATCGAGAAAACCGGGGCACTGCACACGAATAGAGTTTCCTTTTGTGTGTGTCTTGCAGTTTTAACCAAATCCAGCAAATTAAATTGCAGGTCAAAACACAACCGTAAATCGCTGAAGAAGCCAAATTTCGTTTGTGTTGCAGCCTTGCAGCTTGGACCATGCAGACCCATTGAGTCGGCGCTGGGCTTTCACAGTTAAAGATGACACGCAGCCTTGTTCTGTCTCACTCTATGGTTTATCTGTTACTGGTAATGGCTTCGACTGGCCACGACGAGAGCGAAAATATAGAAGATATCATGCAGTGTCATGGAGCAACTCGTTTATCTCCTTTTGAGACAAGAGAAGGTAATGGCATTCTCAGTAAACATGTGTATTGTGAGATTAATAGCGAACAACCACGAGTTGAATACCATTTTGACATTTCCACCGTTGTGCAGACGAGAGTTCCAAATGGCACATTGTCTTACTTGACACTGGAAATCAAGTGCTGCTCATCGATAGAGCTGGATTTTACTAATTTGCATGAGTTGATCAACAAAAATGTTTTGTCAAAATTGGTGTTCGCTGGACCGTGCATCGTCTCGATGCAAAATCTTGCCGTTTGGTCAAACGCGACCGATCTGCTCAGTGTGGGGTTCGGAGGAGGTATTAAAGGCCGAAATCCACAGGTTAGAAAGGAGTTCGGAACTTTGGAAAGAAGCATAAAAACACTAACAACCATCGAATTTGATAACGGCACCACTCGAGATATATTGGACACACTTTCTAGTACCGAGAAGAAGTGGCCTGTAATGGCAGAACTTGCATTGTCAAATCTCTCGCTTGAGATAATTCCACACGAATTGCACACGACTATGCCCTTATTACAAACCCTCCAACTGCAGTCCAATAAATTAAAACGCCCACCAAACTTCCCTTGGTTCAATTCTATTTTAGAGTTGCCTCGTGGTTTAACAAGGAGTAACGCCTTTAACGACGAGATTAAGAACCGAGAAGGCATCGATATCGATACCAACATTTATTCTCGCATTTTGAGATTAGACGCTAACAACATCGAAGATCTAGCATCGTACGAGTTTAAAGGATTTCTGCACAAGCTTTCTCTTGCCAAAAATGGCTTGCGAAAAGTGGGGAGAGCATGTTTTCGCAATTTGAACGGAATTCAGGCCATTGATCTTAGCAAGAATAAGTTGGAAGTCCTTCCACCGGCGCTGTTCCATGGGTTATATTCATTACTAGAAATTAGACTCGGCGAAAACAACTTAACAGTTATTCCACCGGAAATATTTAAAGACTTGAAAAATATAAAAAAGATCACTTTAGATTACAACAGATTAAAGAATATTTCAAGCGGATTATTTGTCACGCTAGACAGGCTTGAGGTTCTGCACTTAGAGGGCAACAAGCTTGAAACAATTGAAGAAGGCGCTTTCTCGAATGACTCTGTTTTACAAGAGATTTACCTTCAAAACAATAATTTTACTCATATTCCCTCTGCTATATTTCGCCTGAGGAATGTGTCCAAGATTGATCTCTCCCACAACAAGTTGACTTTCCATAACCTCCTTGACGTTGTCGAAAGTTTTAGTGATCAATCATTTACCAGTAACTTTTCTTTCAAAGGGGCTGGGCCCAAACTACTCATTTTATCAAATAACAACTTTACTGCGTTGGAAATTCGAGGCTTAAGTGAAGTCAAGGAACGCAAGATTACTCGCTTTCTGGAAAAGTACGAGATCCAGTTAGCGGGAAATGCTTTAACCTGCGATTGTAGCATTTTAGCCATCAAACAAAAGATAGAAACTCTCTTTAAAATCAATCCCCCCTGGAAATCACGGTTTAAAACATGGAAATGTGAATGGCCAGTAGAACTGAAGGGGAAAAACATCCTGGAAATTAACGAGAAGATTGTAATTGCACAAAAGCAGCCAAAGGTTTGCCCTGTTAAATGTTCTTGTTTCGAGCGATGTTTGGATAAAACGATCATTATCGATTGCCAAGGACGAAACCTCACCAAATTACCGAGAATACTGCCACATGGTCCGCTGATTGAGCTTAACCTAAAAAACAACAACATTAGAGAAATTCCAGTATATCCTTTCTTAAACAACGTGTTTGCTTTGTATTTGACGCACAATAAGATCCAACATTTAAATGCGATGGCGGTGAAAAAATTGAAAAGGATCAGAATTCTGCATGTTGACTCGAACAACTTAACAAGCCTGCCAAGAAACATCGAGGACATTCGTTTCACAAACATTGCCTTGCATGGTAATGCATTCAAATGCCACTGCTCTTTGAAGTGGATGAAGAACTGGCTACACAAACTGAAACACATGCATCAAGTTGAACATATCGAAAAAGTTCTTTGTGAGCCAGTGGACAATTCCGACGGGTTGAAAGCGATCTATACTTTGCCCAACGAGAATTTTGGGTGCAACGGAACGGCGGAATACGACAGCAAAACTGTAGCCAACAAAACAACTATTGTACAGGAAAAAACTTCAACAATAATTGCTGTTACTCTGGGAGGTTTGTTAGCAATGAATTTAATTATTTTTATCCTGCTGTATAAGTACCGAGCAGCACTGAAAGCCTTCATGTACACTCGCTTCAAATGGCACCAGTTCGACCGCATAGATGACTTGGATTCAACCAATAAGACATACGACGCGTTTGTATCGTACAGTGAAAAAGAACGCCATTGGGTTGAAAATACCCTGCAAGCACGATTGGAAAATCGCCAGCCTTCGTATAAGCTCTGCATTCATCATCGTGACTTTGAAGTTGGTGCGCCTATCGTGAGGAACATTTTGAACAGCGTCGAACAAAGCAAGCGCATGCTCATGGTGCTCTCTCGCCACTTCTTGCAAAGCGAGTGGTGCATGCTGGAGTTTCGTACGGCACATCACAAAGTGCTGGAAGATCGCCTTAAACTAATAATTATTTTGTTTGATGACGTCAACCTAGCTGAGCTGGATGACGAAATGAAGTTGTACATGCGCACTAACACATATCTTAGTGTAAGCGACAAGTGGTTCTGGGAGAAGCTGATTCGCGCGATGCCACAAAGCTCAGTCAGAAACGAATAAAAGATTTCACATCCGATTGCCACAAGATGTAGGTGATCTCATACCTTGCGCGAAGTACTCCGTGCGGGAAAGACTTATTCAGAAAGCGTTCGGTCTCATTCATCCAAAAAGCGTTTGATTTCTATTTATTCCTATTATCTAGAGAGCTCTGGAGCAACAAAAATGAAAAGCGTGAAGTTACTTGAAGATGATAATGTGGGAAGCTTGCCcaataggccatttccgagttgcctttgcttctgcttcaagacgagtcttcgtgcaaaactttcaaatgaaaatgagtttgatttgcatgaaaaagaaaacgaagactcgttttgacactaagccaaaaccacaactcggaaatgacctattCTAGAAAACCTCTTTTCACTTGAGACGGTCGTTGGTATTTTTTCCCGCCAAATGACACTGGTTTACACCTGCGTCGCACTCGGATGTAAAGGCTAATGTCTGTTAAAAATCACGAGAGGAAGCTCTTACAGAACATCCCGAaagttaaattaattcaacattgtactatagtaaaacaaaaaaacattaacttaagtaaaatGTGACGAGCACCCCTTACCTTCGAGTAAACAGAAAAAGAAAGGGAGCAGAAAAATAGCAGTAAAAACCAACTCCAACTTGACATCGATATCAATTTTTTGTAGTTTCGAAATAAAGAAATATTAAGACTACATTTTGCTACCTTGCTACCTTGCTAACGTcccccccccccccccccAAAAAAAAAAGTACATAACAACTGTttaacttttcttgggacgattttaagtcccaagagaaactgaaaacaattcttatataaaattttgtaaaaatttttggggggataaaacaagttgtgttatgagatcgagaaaacagcgaatTTGGATACAACGTTTGGGACTTATGAACTCTATCTAATGGGAGCAGTCATTTCAAGTCATTTCCAGGTTTTCTGTGGAATTAAGTAATGTACATTGAATTTGATAATAGAAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00560 all species →	LRR_1	Leucine Rich Repeat	Repeat	Interproscan
PF01582 all species →	TIR	TIR domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR017241 all species →	Family	Toll-like receptor	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR000372 all species →	Domain	Leucine-rich repeat N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24365 all species →	TOLL-LIKE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002224 all species →	Biological Process	toll-like receptor signaling pathway	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006954 all species →	Biological Process	inflammatory response	Interproscan
GO:0006955 all species →	Biological Process	immune response	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG026462.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.